Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_H17
(651 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript... 32 0.018
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein. 31 0.032
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein. 29 0.13
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein. 26 0.90
AJ297931-1|CAC35451.1| 166|Anopheles gambiae hypothetical prote... 26 0.90
DQ137801-1|AAZ78362.1| 622|Anopheles gambiae male-specific doub... 25 2.1
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein. 25 2.1
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein. 25 2.7
AB090824-1|BAC57923.1| 298|Anopheles gambiae gag-like protein p... 24 4.8
AY846632-1|AAW31598.1| 412|Anopheles gambiae SAGLIN protein. 23 6.3
AY462096-1|AAS21248.1| 603|Anopheles gambiae transposase protein. 23 6.3
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript... 23 8.4
>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
protein.
Length = 1248
Score = 31.9 bits (69), Expect = 0.018
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 367 PSPLRLPEISGCYQRHGAPPQAQRFWIRRTRHA 465
P PL + E + C+QR+ A P+A R IRR A
Sbjct: 842 PHPLLIKEDARCHQRYLADPEASRAVIRREERA 874
>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
Length = 1187
Score = 31.1 bits (67), Expect = 0.032
Identities = 22/136 (16%), Positives = 55/136 (40%)
Frame = -3
Query: 595 EERMDALENQLKEARFLAEEADKKYDEVARKLAMVEADLXXXXXXXXXXXSKIVELEEEL 416
E + + E LK ++ +EE+ K + + + ++ ++ + V+LEE++
Sbjct: 786 ERELKSAEEDLKRSKKKSEESRKNWKKHEQDFETLKLEIEELQKGIVTAKEQAVKLEEQI 845
Query: 415 RVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKXXXXXXXXXXRSVQKLQKEVDRLE 236
+ L + + ++ K QIK ++ KL K+ D L+
Sbjct: 846 AALQQRLVEVSGTTDEMTAAVTALKQQIKQHKEKMNSQSKELKAKYHQRDKLLKQNDELK 905
Query: 235 DELVAEKEKYKDIGDD 188
E+ ++ + + ++
Sbjct: 906 LEIKKKENEITKVRNE 921
>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
Length = 1376
Score = 29.1 bits (62), Expect = 0.13
Identities = 22/133 (16%), Positives = 55/133 (41%)
Frame = -3
Query: 625 KVLENXSLADEERMDALENQLKEARFLAEEADKKYDEVARKLAMVEADLXXXXXXXXXXX 446
KVL+ +++D L + + + +++ + K+ +E ++
Sbjct: 896 KVLQTKINGLGKQIDKLSANISKLTVEIKTSERNVQKSKDKINSMEDEVEAAQSAIRKGN 955
Query: 445 SKIVELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKXXXXXXXXXXRSVQ 266
+ +LEEE + L+ ++++ EKA++ K +I L R + +Q
Sbjct: 956 DERTQLEEEANKLREELEEMKLAIEKAHEGSSSIKKEIVALQKREAEGKMKRLEFEQILQ 1015
Query: 265 KLQKEVDRLEDEL 227
++ ++ +D L
Sbjct: 1016 TIETKLQETKDTL 1028
Score = 26.6 bits (56), Expect = 0.68
Identities = 38/166 (22%), Positives = 70/166 (42%), Gaps = 11/166 (6%)
Frame = -3
Query: 595 EERMDALENQLKEARFLAEEADKKYDEVARKLAMVEADLXXXXXXXXXXXSKIVELEEEL 416
+E DAL+ + E L +E K+YDE+ E+ L + + E
Sbjct: 340 DETYDALKAERVEKEKLVKEEIKQYDELVSAKESKESTLKNSLDKFAKVQANMRATNERR 399
Query: 415 R-----VVGNNLKSLEVSE-EKANQRE-EEYKNQIKTLT---TRLKXXXXXXXXXXRSVQ 266
+ + + LE+ + K N++E EE + +I++LT T ++ +
Sbjct: 400 KKTLEQIAAEEKRLLELQDVPKKNKKEIEESEAKIESLTRQKTEVEAKLTANLATLKDET 459
Query: 265 K-LQKEVDRLEDELVAEKEKYKDIGDDLDTAFVELILKE*ASVIQR 131
K L +E ++L+ EL+ K + L A EL + + V +R
Sbjct: 460 KVLLEEKEKLQTELIELKRAVDESKSALSIAESELKICQHDEVTER 505
>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
Length = 1229
Score = 26.2 bits (55), Expect = 0.90
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Frame = -3
Query: 409 VGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKXXXXXXXXXXRSV-------QKLQKE 251
+ N K +E + +A +R+E+ + IKT L+ + V +LQ E
Sbjct: 427 IEENYKKIESEKNEALKRQEKLIDHIKTSRLGLEEQKRIKAELSQDVGTSKERIHELQSE 486
Query: 250 VDRLEDEL-VAEKEKYKDIGDDLDTAFVELILKE*ASVIQRL 128
+D + ++L A+ +K++D VEL E V R+
Sbjct: 487 LDNVREQLGDAKIDKHEDARRKKKQEVVELFKLEVPGVYDRM 528
>AJ297931-1|CAC35451.1| 166|Anopheles gambiae hypothetical protein
protein.
Length = 166
Score = 26.2 bits (55), Expect = 0.90
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Frame = -3
Query: 643 ESERARKVLENXSLADEERMDALE-------NQLKEARFLAEEADKKYDEV 512
+ E + E + ADEE D E ++L+EAR +AEE +++ E+
Sbjct: 76 DEEHLEEEQEEEAEADEEEADESESEESEESDELEEARLVAEELEERQQEL 126
>DQ137801-1|AAZ78362.1| 622|Anopheles gambiae male-specific
doublesex protein protein.
Length = 622
Score = 25.0 bits (52), Expect = 2.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 397 LKSLEVSEEKANQREEEYKNQIKTLTTRLK 308
LKS + +KA+QR +E K IKT +K
Sbjct: 219 LKSADGDVQKAHQRIDEGKRTIKTYEALVK 248
>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
Length = 1201
Score = 25.0 bits (52), Expect = 2.1
Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 15/97 (15%)
Frame = -3
Query: 442 KIVELEEELRVVGNNLKSLEVSEEKANQREEE-----------YKNQIKTLTTRLKXXXX 296
K+ ++ E LR + + LK+LE +E+ ++ ++ Y+ ++K +L+
Sbjct: 185 KLEKISEYLRTIEDRLKTLEEEKEELSEYQKWDKARRTLEYVIYETELKETRKQLEELDG 244
Query: 295 XXXXXXRS----VQKLQKEVDRLEDELVAEKEKYKDI 197
Q++QK DRL++ A K+ KD+
Sbjct: 245 QRKSSGDKQLLLTQEIQKAQDRLKNAQKALKDAKKDV 281
>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
Length = 1036
Score = 24.6 bits (51), Expect = 2.7
Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 3/147 (2%)
Frame = -3
Query: 595 EERMDALENQLKEARFLAEEADKKYDEVARKLAMVEADLXXXXXXXXXXXSKIVELEEEL 416
E R++ALE QL+ R E + + +ARK A +E + K+ +
Sbjct: 198 EARLEALEAQLQSMRAREEFQQQIHVCMARK-AWLEYEELFLLYSATLKDLKLAK----- 251
Query: 415 RVVGNNLKSLEVSEEKANQREEEYKNQI---KTLTTRLKXXXXXXXXXXRSVQKLQKEVD 245
K E E++ NQ ++E + + K L T + L+++ +
Sbjct: 252 -------KCTEEKEQQYNQFKQEMEAILARKKELETSKAKQVAIGQRSTDEINSLEEKTE 304
Query: 244 RLEDELVAEKEKYKDIGDDLDTAFVEL 164
RLED + +K + D D EL
Sbjct: 305 RLEDTISKQKRELMDALAKADERKTEL 331
>AB090824-1|BAC57923.1| 298|Anopheles gambiae gag-like protein
protein.
Length = 298
Score = 23.8 bits (49), Expect = 4.8
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +3
Query: 108 CQGTQTSSLCI 140
CQGT SSLCI
Sbjct: 249 CQGTNRSSLCI 259
>AY846632-1|AAW31598.1| 412|Anopheles gambiae SAGLIN protein.
Length = 412
Score = 23.4 bits (48), Expect = 6.3
Identities = 12/51 (23%), Positives = 23/51 (45%)
Frame = -3
Query: 385 EVSEEKANQREEEYKNQIKTLTTRLKXXXXXXXXXXRSVQKLQKEVDRLED 233
++ ++ Q E+E++ TL +L + LQK++D L D
Sbjct: 99 QLLDDAQRQMEQEHRQYAATLEEQLHAAQQETQQEQEMKKALQKQLDALTD 149
>AY462096-1|AAS21248.1| 603|Anopheles gambiae transposase protein.
Length = 603
Score = 23.4 bits (48), Expect = 6.3
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -3
Query: 352 EEYKNQIKTLTTRLKXXXXXXXXXXRSVQKLQKEVDRLEDELVAEK--EKYK 203
E++KN +++ + L + V+K+ K+VD L +L+ K + YK
Sbjct: 463 EKFKNICESIISELLPLQKPAVEVEKVVKKVSKDVDMLFGDLLKNKGAQNYK 514
>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
protein.
Length = 1168
Score = 23.0 bits (47), Expect = 8.4
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -1
Query: 381 SQRRRPTNAKRSTKIRSKPSPPV*RRLKHVPSSPSVPCRNCKRRS 247
++ PT ++ S P PP+ R + +P SP +RR+
Sbjct: 1088 NEAAEPTGEVEEEEV-SPPVPPIPPRSRRLPPSPRTTEMRRRRRN 1131
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 586,705
Number of Sequences: 2352
Number of extensions: 11211
Number of successful extensions: 52
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64395870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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