Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_H16
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    29   0.44 
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   2.4  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    26   3.1  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    26   3.1  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    26   4.1  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    26   4.1  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    26   4.1  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   4.1  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    26   4.1  
SPAC6F12.04 |||COPI-coated vesicle associated protein |Schizosac...    26   4.1  
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    25   9.5  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    25   9.5  

>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = -3

Query: 314  QRPIVINDPD---PFFAQPTVGNGYEPIDNRPYI-VNP 213
            QRP+V+ DPD   P  ++P  GNG    D+ P + VNP
Sbjct: 1158 QRPMVLKDPDHLVPEPSRPHCGNGLVFYDDIPLLEVNP 1195


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
 Frame = -3

Query: 206 DYNPNG-NGYEPIDNGAYYVDRPQG---RPYF 123
           DYN N  N Y PI N  Y+++   G    PYF
Sbjct: 119 DYNNNRKNFYPPIQNSTYFINATGGIDSMPYF 150


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 405 SWLFSARNRSTRIRANKYWTSVRKPSLQQTPEANCDQ 295
           S L   R  S R+R+N+    V +P + QTP  N  +
Sbjct: 248 SELLRRRIESARLRSNQLNEPVEQPRVVQTPVTNASE 284


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/42 (26%), Positives = 16/42 (38%)
 Frame = -3

Query: 404 PGFSRPVIGQPGYVPISTGPAYVNRPYNRPQRPIVINDPDPF 279
           PGF R        +   T    +  P+N   RP++   P  F
Sbjct: 156 PGFLRDCFPSSNSITTGTASPKLGSPFNHINRPVLDRSPSSF 197


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 356 STGPAYVNRPYNRPQRPIVIN 294
           +T P   N P  RP+RP+V N
Sbjct: 293 ATEPGVSNIPETRPERPVVYN 313


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 290 PDPFFAQPTVGNGYEP-IDNRPYIVNPPKDYNPNGNGYEPIDNGAY 156
           P P  A   + +   P +++ PY+ N   D+N NGN   P+   +Y
Sbjct: 353 PQPASAMKPMASPMLPNVNSMPYLSNG--DHNNNGNTSSPVSRFSY 396


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 26/89 (29%), Positives = 33/89 (37%)
 Frame = -3

Query: 446 DNNHPGHVLISNPDPGFSRPVIGQPGYVPISTGPAYVNRPYNRPQRPIVINDPDPFFAQP 267
           D+  PG V   NP+   S      P    +S  P  +N   N P RP      D +F   
Sbjct: 137 DSFSPGVVASVNPNSNNSPTFYSNPP--ALSNIPIPLN---NSPYRP-----EDAYFQLQ 186

Query: 266 TVGNGYEPIDNRPYIVNPPKDYNPNGNGY 180
             G      D  PY ++P   Y P G  Y
Sbjct: 187 GAG---VKADINPYNLSPYSQYGPEGTAY 212


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
 Frame = -3

Query: 365  VPISTGPAYVNRPYN--RPQRPIVINDPDPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPN 192
            VP    P++ N PY    PQ P+               N Y PI      VNP   Y P+
Sbjct: 945  VPPVQQPSHPN-PYTPVAPQSPVAAASRISSSPNMPPSNPYTPIAVASSTVNPAHTYKPH 1003

Query: 191  G 189
            G
Sbjct: 1004 G 1004


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 209 KDYNPNGNGYEPIDNGAYYVDRPQGRP 129
           K Y  +G G +P + G YY + P+G+P
Sbjct: 479 KIYCVHGVG-KPTERGYYYTNNPEGQP 504


>SPAC6F12.04 |||COPI-coated vesicle associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 363 HVSGLTDYGPRKARIRVRDENV 428
           +V+GL DY PR  R    D+NV
Sbjct: 108 YVAGLQDYAPRSMRDNDWDDNV 129


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = -3

Query: 359 ISTGPAYVNRPYNRPQRPIV 300
           ++T P+ +++ YN  +RP++
Sbjct: 8   VNTNPSLISKSYNMKKRPVI 27


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 443 NNHPGHVLISNPDPGFSRPVIGQPGYVPISTGPAYVNRP 327
           N  PG+ + SN  P    P +  PG   +S  P+  + P
Sbjct: 198 NVRPGYGMPSNQKPPNFAPGMPAPGPTAVSASPSLQSMP 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,180
Number of Sequences: 5004
Number of extensions: 48744
Number of successful extensions: 122
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)