Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_H16
(544 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 38 0.004
03_06_0471 + 34169562-34169892,34170121-34170347 32 0.26
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 31 0.45
01_07_0078 - 40923115-40924016,40924341-40924416,40924686-40924718 30 1.4
06_01_0430 - 3058832-3058952,3059590-3059795,3060103-3060294,306... 29 3.2
05_01_0060 - 418559-418577,418655-418738,418857-418966,419467-41... 29 3.2
01_06_1682 - 39130696-39131705,39132355-39132583 29 3.2
04_03_1022 - 21778315-21779007 28 4.2
06_03_0007 - 15325720-15325739,15326236-15326383,15326512-153270... 28 5.5
02_04_0382 - 22501041-22501279,22501717-22501810 28 5.5
11_01_0385 + 2915532-2916482 27 7.3
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907... 27 7.3
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 27 9.7
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 38.3 bits (85), Expect = 0.004
Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 3/103 (2%)
Frame = -3
Query: 410 PDPGFSRPVIGQPGYVPISTGPA-YVNRPYNRPQRPIVINDPDPFFAQPTVGNGYEPIDN 234
P P ++ P G P P + PA +V PY P + P A+ Y P
Sbjct: 169 PSPSYALPPAGYPAVPPYQSYPASHVPAPYPTSAYP---HPPPSLLARDVEHAAYPPTST 225
Query: 233 RPYIVNPPKDY--NPNGNGYEPIDNGAYYVDRPQGRPYFKPTP 111
PP+ Y P G Y P G Y +PQ R + P P
Sbjct: 226 ----TYPPQPYPPQPQGQTYPPQPQGETYQPQPQ-RETYPPQP 263
Score = 30.7 bits (66), Expect = 0.79
Identities = 30/105 (28%), Positives = 38/105 (36%), Gaps = 6/105 (5%)
Frame = -3
Query: 413 NPDPGFSRPVIGQPGYVPISTGPAYVNRPYN-RPQRPIVINDPDPFFAQPTVGNG-YEPI 240
+P P + Y P ST Y +PY +PQ P QP Y P
Sbjct: 205 HPPPSLLARDVEHAAYPPTST--TYPPQPYPPQPQGQTYPPQPQGETYQPQPQRETYPPQ 262
Query: 239 DN-RPYIVNP---PKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKP 117
+PY P P P G Y P G Y P+G+P + P
Sbjct: 263 PQVQPYPPKPQGQPYPPQPQGQPYPPQPYGQTYPPPPKGQPTYPP 307
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 32.3 bits (70), Expect = 0.26
Identities = 32/105 (30%), Positives = 38/105 (36%), Gaps = 1/105 (0%)
Frame = -3
Query: 416 SNPDPGFSRPV-IGQPGYVPISTGPAYVNRPYNRPQRPIVINDPDPFFAQPTVGNGYEPI 240
SN D GF G PG P+ G Y N P P P + + P Y P
Sbjct: 11 SNADKGFHGAYPSGYPGAYPLMQG--YPNSPGQYPT-------PGGYPSAPP--GQYPPA 59
Query: 239 DNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPXP 105
P PP Y P+ GY P GAY +P + P P
Sbjct: 60 GGYPGAQYPPSGYPPSQGGYPP---GAYPPSGYPQQPGYPPAGYP 101
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 31.5 bits (68), Expect = 0.45
Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 11/107 (10%)
Frame = -3
Query: 398 FSRPVIGQPGYVPISTGPAYVNRP----YNRPQRPIVINDPDPFFA----QPTVGNGYEP 243
+ P + QP P + Y P Y++P + ++N P QP Y P
Sbjct: 338 YQAPPVPQP-QAPPAPPQQYQTPPQFPQYSQPPQSGMVNPSTPLPPAAPQQPEEAMSYAP 396
Query: 242 IDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDRPQGRPYFKPTP 111
+ P V PP Y P +G P N + Y + P GRP P P
Sbjct: 397 PQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPP 442
>01_07_0078 - 40923115-40924016,40924341-40924416,40924686-40924718
Length = 336
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Frame = -3
Query: 434 PGHVLISNPDPGFSRPVIGQPGYVPISTGPAYVNRPYNRPQRPIVINDPDPF----FAQP 267
P +S P P +RP GY+ P+Y NR + P P P P+ + Q
Sbjct: 242 PAPAPMSMPMP-MARPGPSSQGYIDEEYSPSYYNR--SSPYEPYYYPQPSPYRYQHYQQS 298
Query: 266 TVGNGYEPIDNRPYIVNPPKD 204
+ + Y + +PP+D
Sbjct: 299 SADDYYYGAPQQRSAFSPPRD 319
>06_01_0430 -
3058832-3058952,3059590-3059795,3060103-3060294,
3061241-3061287,3062233-3062455
Length = 262
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Frame = -3
Query: 389 PVIGQPGYVPISTGPAYVNR--PYNRPQRPIVINDPDPFFAQPTVGNGYEPIDNRPYIVN 216
P +GQP + + P R PY+ P V P P A + G + + Y +
Sbjct: 29 PRVGQPSHGVANAPPPEPPRAAPYHHHGPPTVSAAPHPVPASSSTSMGIQVVIKPAYRIT 88
Query: 215 PPKDYNP 195
PP P
Sbjct: 89 PPPQLPP 95
>05_01_0060 -
418559-418577,418655-418738,418857-418966,419467-419577,
419914-419992,420182-420264,420347-420439,420902-421810
Length = 495
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = -3
Query: 332 RPYNRPQRPIVINDPDPFFAQPTVGNGYEPIDNRPYIVNPPK 207
R Y R +R ++ DPD A+P+ + E ++ +P +V+ P+
Sbjct: 79 RRYLRKRRSRLLPDPDATTAKPSSSSSSEFVELKPEVVDFPR 120
>01_06_1682 - 39130696-39131705,39132355-39132583
Length = 412
Score = 28.7 bits (61), Expect = 3.2
Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 6/103 (5%)
Frame = -3
Query: 401 GF-SRPVIGQPGYVPISTGPA----YVNRPYNRPQRPIVIN-DPDPFFAQPTVGNGYEPI 240
GF S+P I QP P ++ P Y + P+N P+ P PF P + Y
Sbjct: 172 GFCSKPHI-QPPIFPYNSPPPSPYQYPSPPFNYKSPPLPNQFSPPPFNKFPPPSHQYPSP 230
Query: 239 DNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTP 111
Y PP Y P N Y+ + P G Y P P
Sbjct: 231 PQSSYHSPPPYQYTP-PNSYQAPPTSYNHPPPPYG--YNSPIP 270
>04_03_1022 - 21778315-21779007
Length = 230
Score = 28.3 bits (60), Expect = 4.2
Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Frame = -3
Query: 434 PGHVLISNPDPG--FSRPVIGQPGYVPISTGPAYVNRPYNRPQRPIVINDPDPFFAQPTV 261
P H+L +P P + P P + P PA PY P P + P P A T
Sbjct: 49 PPHLLPPSPAPQQWYDHPPNYHPPHTP---APAPAPGPYIPPHHPHHHHPPTPAPAPSTT 105
Query: 260 GNGYEPIDNRPYIVNPPKDYNP 195
G+ + PY PP P
Sbjct: 106 PGGHGGVP--PYYPPPPVTPTP 125
>06_03_0007 -
15325720-15325739,15326236-15326383,15326512-15327025,
15327077-15327507
Length = 370
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 273 GKEWIGVIDHNWPLGSVVGTVYVRWSSTYWHVSGLTDYGPRKARIRV 413
GKE ++ H + L + + VR S +H++G YGP I+V
Sbjct: 111 GKEMPLILGHPF-LSTAGANIDVRTGSIRFHINGKIRYGPNPQNIQV 156
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = -3
Query: 275 AQPTVGNGYEPIDNRPYIVNPPK----DYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPX 108
A+ T +G P ++ + PP D P+ + Y+P + YY D P Y+ P P
Sbjct: 28 AEQTHDDGDNPPESPDHEDPPPSPEYYDPPPSPDYYDPPHSPDYY-DPPPSPDYYDPPPS 86
Query: 107 PW 102
P+
Sbjct: 87 PY 88
>11_01_0385 + 2915532-2916482
Length = 316
Score = 27.5 bits (58), Expect = 7.3
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = -3
Query: 410 PDPGFSR--PVIGQPGYVPISTGPAYVNRPYNRPQRPIVINDPDPFFAQPTVGNGYEPID 237
P PG ++ P+ P + P + PA+ P P + P P A P GN + P+
Sbjct: 215 PHPGGNKWPPLPPFPSHPPPT--PAWPQPGNKWPPLPPFPSHPPPTPAWPHPGNQWPPLP 272
Query: 236 NRPYIVNPPKDYNPNGNGYEPI 171
P+ P + GN + P+
Sbjct: 273 PFPFHPPPMPAWPHPGNQWPPL 294
>01_01_1145 +
9073973-9074281,9075440-9075998,9076088-9076241,
9077475-9077565,9077722-9077793,9077879-9078390,
9078854-9078923,9079514-9079579,9080266-9080570,
9080872-9081006,9081141-9081204,9081429-9081574,
9081669-9081773,9082310-9082490
Length = 922
Score = 27.5 bits (58), Expect = 7.3
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -3
Query: 260 GNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPT-PXP 105
G+G +N+ Y N PK +P NG Y P G+P++ P P P
Sbjct: 113 GHGNPNKNNQAYHRNGPKRRSPAANGTPSYPAAMPYHQHP-GQPFYYPVIPSP 164
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 27.1 bits (57), Expect = 9.7
Identities = 21/72 (29%), Positives = 27/72 (37%)
Frame = -3
Query: 341 YVNRPYNRPQRPIVINDPDPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNG 162
Y + P P P + P P P+ P + P IV P Y P+ YEP
Sbjct: 605 YPSPPEVVPSPPKITPYPSPPEVTPSPPE-ITPYPSPPDIVPSPPSYEPSPPSYEP-SPP 662
Query: 161 AYYVDRPQGRPY 126
Y + P PY
Sbjct: 663 EYAPEPPVYAPY 674
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,615,493
Number of Sequences: 37544
Number of extensions: 358489
Number of successful extensions: 822
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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