Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_H15
         (485 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1250 - 25183375-25183815                                        107   5e-24
03_04_0027 + 16593133-16593573                                        104   3e-23
02_01_0563 + 4134954-4135388                                          102   1e-22
01_02_0037 + 10476208-10476876                                         29   1.5  
11_03_0135 - 10547460-10547558,10547926-10548086,10548183-105483...    28   4.6  
09_04_0302 + 16501020-16501049,16501568-16501659,16502063-165021...    27   6.0  
08_02_1146 + 24678142-24678258,24678550-24678587,24678997-246790...    27   6.0  
02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486     27   6.0  
04_03_1020 - 21761297-21761555,21761630-21761739,21762402-217626...    27   8.0  
03_06_0352 - 33312443-33312652,33312747-33312854,33313224-333133...    27   8.0  

>07_03_1250 - 25183375-25183815
          Length = 146

 Score =  107 bits (257), Expect = 5e-24
 Identities = 52/124 (41%), Positives = 73/124 (58%)
 Frame = -3

Query: 444 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRN 265
           M TS +K RK RGHVS                GNAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MTTSLRKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 264 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXLPKQ 85
           FH  +NK + P +N+++LW++V  +   + A A  GK P++++ +           LP++
Sbjct: 61  FHRLRNKFYSPAVNVERLWSMVPAEQAAEAAGA--GKAPLLDVTQFGYFKVLGKGLLPEK 118

Query: 84  PVIV 73
           P++V
Sbjct: 119 PIVV 122


>03_04_0027 + 16593133-16593573
          Length = 146

 Score =  104 bits (250), Expect = 3e-23
 Identities = 54/125 (43%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
 Frame = -3

Query: 444 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRN 265
           M T  KK RK RGHVS                GNAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 264 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVK-AXXXXXXXXXXLPK 88
           FH   N+  CP +N+++LW++V      K A A  GK PVI++ +             P+
Sbjct: 61  FHKLSNRFHCPAVNVERLWSMVPTD---KAAEAGAGKAPVIDVTQFGYTKVLGKGMLPPQ 117

Query: 87  QPVIV 73
           +P++V
Sbjct: 118 RPIVV 122


>02_01_0563 + 4134954-4135388
          Length = 144

 Score =  102 bits (245), Expect = 1e-22
 Identities = 53/125 (42%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
 Frame = -3

Query: 444 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRN 265
           M T  KK RK RGHVS                GNAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 264 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVK-AXXXXXXXXXXLPK 88
           FH   N+  CP +N+++LW++V  +     A A  GK PVI++ +             P+
Sbjct: 61  FHRLSNRFHCPAVNVERLWSMVPAE-----AGAGAGKAPVIDVTQFGYTKVLGKGMLPPE 115

Query: 87  QPVIV 73
           +P++V
Sbjct: 116 RPIVV 120


>01_02_0037 + 10476208-10476876
          Length = 222

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = +2

Query: 11  HKHHPHPXIFFSADFEKNFAFTMTGCLGSLPLPSNL*YPALTILMTGTLPSGADA 175
           H HH HP   F   F   +A TM     S P      +P +T+ +T T   GA A
Sbjct: 30  HHHHHHPAAMFHQSFP--YASTMATLSASAP------FPTITLDLTQTPAGGAGA 76


>11_03_0135 -
           10547460-10547558,10547926-10548086,10548183-10548306,
           10548566-10548729,10549803-10549883,10549973-10550097,
           10550200-10550430,10550566-10550588,10551055-10551539,
           10551678-10552075,10552903-10552988,10553120-10553397,
           10553494-10553714,10553927-10554018,10554148-10554213,
           10555855-10556022
          Length = 933

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 187 EAEVCICSRWQ-GPRHQYCQSWILQVARQRQTPQTTCHSK 71
           E ++ +CSR   G  H YC   ++Q   + +    TCHS+
Sbjct: 288 EEKLAVCSRCNDGAEHIYCMRVMMQEVPKAKWLCETCHSE 327


>09_04_0302 +
           16501020-16501049,16501568-16501659,16502063-16502198,
           16502297-16502727,16502950-16503028
          Length = 255

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 318 FCDGAHHQHYHDLLDAYG 371
           +C+G HH H H   D+ G
Sbjct: 132 YCNGGHHHHGHQCYDSVG 149


>08_02_1146 +
           24678142-24678258,24678550-24678587,24678997-24679012,
           24679874-24680002,24680073-24680229,24680337-24680530,
           24680668-24680916,24681196-24681309,24681949-24681990,
           24682402-24682572,24682932-24683104,24683378-24683624,
           24684046-24684130,24684401-24684510,24684714-24684977,
           24685885-24685950,24686431-24686525,24686780-24686858
          Length = 781

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -2

Query: 154 GPRHQYCQSWILQVARQRQTPQTTCHS 74
           GP H     WI +  +Q   P+   HS
Sbjct: 258 GPMHNAADKWITEFGKQNNNPEEWAHS 284


>02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486
          Length = 296

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 335 PPALPRPPGCLRCFPIRPCP 394
           PPA P PP  L C P+ P P
Sbjct: 10  PPAPPSPPPALPCDPMPPPP 29


>04_03_1020 -
           21761297-21761555,21761630-21761739,21762402-21762635,
           21762710-21762817,21762910-21762969,21763549-21763624,
           21763710-21763870,21764485-21764547,21764657-21764744,
           21765062-21765592,21766344-21766783
          Length = 709

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +2

Query: 332 SPP-ALPRPPGCLRCFPIRPCP 394
           SPP  LP PPG   C P+ P P
Sbjct: 263 SPPHPLPLPPGPATCSPLPPSP 284


>03_06_0352 -
           33312443-33312652,33312747-33312854,33313224-33313397,
           33313489-33313695,33313700-33313987,33314087-33314319,
           33314450-33315263
          Length = 677

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = -2

Query: 181 EVCICSRWQGPRHQYCQSWILQVARQRQTPQTTCHSKSKVLLKISREENXRMWV 20
           E+  C R Q  + Q C+ W  Q   +    Q  C    +     S E N ++W+
Sbjct: 245 ELNTCYRMQWAQPQRCEGWASQPHEETVDGQLKCERWIRDDNSKSEESNAQLWL 298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,911,549
Number of Sequences: 37544
Number of extensions: 254869
Number of successful extensions: 742
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)