Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_H14
(671 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 211 6e-56
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 211 6e-56
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 29 0.61
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 28 1.4
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 28 1.4
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 27 2.5
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 27 3.3
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 5.7
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 25 7.5
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 25 7.5
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb... 25 7.5
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 7.5
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 25 9.9
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 25 9.9
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 25 9.9
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.9
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 211 bits (516), Expect = 6e-56
Identities = 102/197 (51%), Positives = 140/197 (71%)
Frame = -2
Query: 667 FSKRQVGTTXVNRTQGTKIASEGLKGRXFEVSLADLQADTDAERSFRKFRLIAEYVQGRN 488
F + VG T VNRT G K A++ LKGR EVSLADLQ D E SFRK +L E +QG++
Sbjct: 38 FEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDE--EHSFRKVKLRVEDIQGKS 95
Query: 487 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 308
L +F+G D+T+DKLR +V+KWQ+ IEAN +KTTDGY+ R+F IGFT++ +KT Y
Sbjct: 96 CLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTY 155
Query: 307 AQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKV 128
AQ +Q+RAI +KM ++I ++E+V KLIP+ I + IEKA + IYPL++V +RKV
Sbjct: 156 AQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKV 215
Query: 127 KVLKRPRFEISKLMELH 77
K+LK P+ + KL+ELH
Sbjct: 216 KILKAPKHDAQKLLELH 232
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 211 bits (516), Expect = 6e-56
Identities = 101/197 (51%), Positives = 143/197 (72%)
Frame = -2
Query: 667 FSKRQVGTTXVNRTQGTKIASEGLKGRXFEVSLADLQADTDAERSFRKFRLIAEYVQGRN 488
F + VG T VNRT G K A++ LKGR EVSLADLQ D E +FRK +L E +QG++
Sbjct: 38 FEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDE--EHAFRKVKLRVEDIQGKS 95
Query: 487 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 308
L +F+G+ +T+DKLR +V+KWQT IEA+ +KTTDGY+ RVF IGFT + + +KT Y
Sbjct: 96 CLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTY 155
Query: 307 AQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKV 128
AQ +Q+RAIR+KM ++I ++ +RE+V KLIP+ I ++IE+A I+PL++V +RKV
Sbjct: 156 AQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKV 215
Query: 127 KVLKRPRFEISKLMELH 77
K+LK P+ + KL+ELH
Sbjct: 216 KILKAPKHDAQKLLELH 232
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 29.1 bits (62), Expect = 0.61
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Frame = -2
Query: 643 TXVNRTQG-TKIASEGLKGRXFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHG 467
T VN+ TK+A KG +V++ L+ DAE + + F I EY++ N
Sbjct: 82 TSVNKANMLTKLAET--KGAAADVNI--LKRTKDAEENKKLFEKIIEYIRATNKKVGVFP 137
Query: 466 MDLTTDKLRWMVKKWQTLIE-ANIDVKTTDGYVLRVFCIGFTNKDSLSQRK 317
D T K + +W ++ E + D + C+ ++ L+ K
Sbjct: 138 KDKTQGK---FINEWDSIFEPVKSEFNLVDASLGLAKCLAIKDEQELANIK 185
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +1
Query: 85 PSTSRSRNGASSTLSPFGCKHRAE 156
PSTSR RN S LS KHRA+
Sbjct: 736 PSTSRERNNNISELSNSRTKHRAK 759
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -2
Query: 265 EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 134
E + D +R++ ++ + +A ++ C GI +R+VC R
Sbjct: 387 EFVPPDALEPLVRKIADEFVTSGVANEV--VCAGINAIREVCAR 428
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 27.1 bits (57), Expect = 2.5
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = -2
Query: 583 FEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTLI 410
F+V + + D R+ + +A Q R V C H MDL + LR +V ++ L+
Sbjct: 87 FDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAILL 144
Query: 409 EANIDVKTT 383
E + D++TT
Sbjct: 145 ETSKDLETT 153
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 419 LPFFNHPPELIGCEVHAVEVAEHITS 496
L H PEL+ C +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -1
Query: 359 LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENV 267
LHW+ L+ +Q + P H+GQ S + NV
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNV 1194
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = -2
Query: 442 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 305
++ W L+ T GYV+R GFT+ ++ + K +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = -2
Query: 352 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELRE 224
G T +DS+ ++ A H + R +++K E ++ D +N +++
Sbjct: 7 GITQEDSIEKKSKNVASHGEKRKVKRKK-EDLSMDGSNDGVKD 48
>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 152 ARCLHPKGESVEEAPFRDLEVD 87
+RCL ++V+EA RDLE++
Sbjct: 22 SRCLGFAAQNVDEANLRDLEIE 43
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -2
Query: 463 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 365
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +2
Query: 440 PELIGCEVHAVEVAEHITSL 499
PELI C H EV E I SL
Sbjct: 216 PELINCIAHPEEVPETIHSL 235
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = -2
Query: 616 KIASEGLKGRXFEVS----LADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDL 458
K+ S+ L G EV+ +DL+++ D + + I++ G + LCN D+
Sbjct: 216 KLHSQSLVGNNCEVNSEDEFSDLESEVDPDELEKAMCPISDMFNGDDELCNIRLYDI 272
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 602 FRSNFRSLGTVDXRGADLPLAEH 670
F + RSL +VD LPL EH
Sbjct: 44 FSRSHRSLSSVDVSSPSLPLREH 66
>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 452
Score = 25.0 bits (52), Expect = 9.9
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Frame = +2
Query: 86 HQLRDL-ETGPLQHFHLSDANIAQRV-DAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACN 259
H DL E H H + V +A V GNG++N L+H+ E +D +
Sbjct: 265 HHFCDLSEISKFNHQHSGKPDHPSLVSNASLAPFIVEGNGIKNGLLHYNMETAETDESYT 324
Query: 260 DFTHFLSDCSDLS 298
D + +LS
Sbjct: 325 DLDDTFARLKNLS 337
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,721,557
Number of Sequences: 5004
Number of extensions: 56136
Number of successful extensions: 160
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -