Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_H14
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524...   253   1e-67
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221...   251   3e-67
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120...   251   4e-67
04_01_0253 - 3358090-3359052                                           31   0.63 
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439...    29   3.4  
06_03_0290 - 19193707-19193752,19193822-19194090                       28   5.9  
05_06_0094 + 25477367-25477398,25477516-25477891,25478292-254783...    28   7.8  
04_03_0983 + 21423086-21423280,21423330-21423404,21423531-214236...    28   7.8  

>03_02_0043 +
           5242496-5242554,5242673-5242778,5243586-5243723,
           5243794-5243979,5244075-5244275,5244362-5244460
          Length = 262

 Score =  253 bits (619), Expect = 1e-67
 Identities = 120/198 (60%), Positives = 157/198 (79%)
 Frame = -2

Query: 670 MFSKRQVGTTXVNRTQGTKIASEGLKGRXFEVSLADLQADTDAERSFRKFRLIAEYVQGR 491
           +F+ R +G T V+RTQGTKIASEGLK R FEVSLADLQ D D  +++RK RL AE VQG+
Sbjct: 37  VFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGK 94

Query: 490 NVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTC 311
           NVL NF GM  TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+FCIGFT +     ++TC
Sbjct: 95  NVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTC 154

Query: 310 YAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRK 131
           YAQ +Q+R IR+KM EI+    ++ +L+E+V+K IP+ I K+IEKA   I+PL++V +RK
Sbjct: 155 YAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRK 214

Query: 130 VKVLKRPRFEISKLMELH 77
           VK+LK P+F++ KLME+H
Sbjct: 215 VKILKAPKFDLGKLMEVH 232


>02_02_0482 -
           10819562-10819813,10820773-10820952,10822073-10822150,
           10823056-10823256,10823365-10823550,10823646-10823783,
           10824396-10824501,10824634-10824692
          Length = 399

 Score =  251 bits (615), Expect = 3e-67
 Identities = 121/198 (61%), Positives = 155/198 (78%)
 Frame = -2

Query: 670 MFSKRQVGTTXVNRTQGTKIASEGLKGRXFEVSLADLQADTDAERSFRKFRLIAEYVQGR 491
           +FS R +G T V+RTQGTKIASEGLK R FEVSLADLQ D D  +++RK RL AE VQGR
Sbjct: 37  VFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED--QAYRKVRLRAEDVQGR 94

Query: 490 NVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTC 311
           NVL NF GM  TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+FCIGFT +     ++TC
Sbjct: 95  NVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTC 154

Query: 310 YAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRK 131
           YAQ +Q+R IR+KM EI+    +  +L+E+V+K IP+ I K+IEK+   I+PL++V IRK
Sbjct: 155 YAQASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKSTSSIFPLQNVFIRK 214

Query: 130 VKVLKRPRFEISKLMELH 77
           VK+LK P+F++ KLME+H
Sbjct: 215 VKILKAPKFDLGKLMEVH 232


>12_02_0012 -
           12309332-12310228,12311087-12311669,12311945-12312051,
           12313190-12313237,12315139-12315216,12315300-12315500,
           12315612-12315797,12315870-12316007,12318311-12318416,
           12318529-12318587
          Length = 800

 Score =  251 bits (614), Expect = 4e-67
 Identities = 120/198 (60%), Positives = 156/198 (78%)
 Frame = -2

Query: 670 MFSKRQVGTTXVNRTQGTKIASEGLKGRXFEVSLADLQADTDAERSFRKFRLIAEYVQGR 491
           +F+ R VG T V+RTQGTKIASEGLK R FEVSLADLQ D D  +++RK RL AE VQG+
Sbjct: 37  VFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGK 94

Query: 490 NVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTC 311
           NVL NF GM  TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+FCIGFT +     ++TC
Sbjct: 95  NVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTC 154

Query: 310 YAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRK 131
           YAQ +Q+R IR+KM EI+    ++ +L+E+V+K IP+ I K+IEKA   I+PL++V +RK
Sbjct: 155 YAQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRK 214

Query: 130 VKVLKRPRFEISKLMELH 77
           VK+LK P+F++ KLME+H
Sbjct: 215 VKILKAPKFDLGKLMEVH 232


>04_01_0253 - 3358090-3359052
          Length = 320

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 52  PLDLHRLRREVPSTSRSRNGASSTLSPFGCKHRAEGRCHGRPSRC 186
           PL   R RR   +TSR+ +G  +T +  G       R  GRP RC
Sbjct: 62  PLRCRRRRRRRETTSRATDGTMTTTTNTGGVRSKGRRGRGRPCRC 106


>11_01_0558 -
           4396750-4396986,4397699-4398050,4398266-4398504,
           4398608-4398709
          Length = 309

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 226 EVVNKLIPDSIAKDIEKACHGIYPLRD 146
           ++VN  IPD + + ++K C  IY LR+
Sbjct: 34  QLVNTGIPDDLLERVKKVCSDIYKLRE 60


>06_03_0290 - 19193707-19193752,19193822-19194090
          Length = 104

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 483 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 394
           +A S A T  P  S GW+  G  S+ P+L+
Sbjct: 67  AAGSAARTRSPSQSNGWITGGSASAMPSLV 96


>05_06_0094 +
           25477367-25477398,25477516-25477891,25478292-25478315,
           25479069-25481828
          Length = 1063

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/44 (38%), Positives = 19/44 (43%)
 Frame = +1

Query: 34  TXSPCFPLDLHRLRREVPSTSRSRNGASSTLSPFGCKHRAEGRC 165
           T +  F    H  R E PST R+ NG     S F     AE RC
Sbjct: 681 TSAKAFSQLFHGTRVEPPSTLRNSNGGVEHPSRFSSVPEAELRC 724


>04_03_0983 +
           21423086-21423280,21423330-21423404,21423531-21423632,
           21423721-21423774,21423880-21423972,21424526-21424618,
           21427329-21427433,21427517-21427615,21427701-21427997,
           21428512-21428622
          Length = 407

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +3

Query: 441 LSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARETSK 584
           +++  +R+ PW L++  R  T +A  +  +KD SA   + +S  E  K
Sbjct: 274 ITIREIRNHPWFLKNLPRELTEAAQAMYYKKDNSAPTYSVQSVEEIMK 321


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,985,594
Number of Sequences: 37544
Number of extensions: 405137
Number of successful extensions: 1224
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)