Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_H14
         (671 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal pr...   303   1e-82
AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA, i...   303   1e-82
Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal prot...   287   7e-78
AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB, i...   269   2e-72
AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p pro...   227   8e-60
AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD, i...   198   7e-51
AE013599-2921|AAF57537.1|  632|Drosophila melanogaster CG15904-P...    29   7.6  

>AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal
           protein S3a protein.
          Length = 268

 Score =  303 bits (744), Expect = 1e-82
 Identities = 145/198 (73%), Positives = 166/198 (83%)
 Frame = -2

Query: 670 MFSKRQVGTTXVNRTQGTKIASEGLKGRXFEVSLADLQADTDAERSFRKFRLIAEYVQGR 491
           MF  RQ+G T VNRTQG +IAS+ LKGR FEVSLADLQ D D ERSFRKFRLIAE VQ R
Sbjct: 38  MFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDR 97

Query: 490 NVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTC 311
           NVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTC
Sbjct: 98  NVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTC 157

Query: 310 YAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRK 131
           YAQ +QVR IR +M +IIT +V+ ++L+++VNKL  DSIAKDIEK+C  IYPL DV IRK
Sbjct: 158 YAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRK 217

Query: 130 VKVLKRPRFEISKLMELH 77
           VKVLK+PRF++SKL+ELH
Sbjct: 218 VKVLKKPRFDVSKLLELH 235


>AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA,
           isoform A protein.
          Length = 268

 Score =  303 bits (744), Expect = 1e-82
 Identities = 145/198 (73%), Positives = 166/198 (83%)
 Frame = -2

Query: 670 MFSKRQVGTTXVNRTQGTKIASEGLKGRXFEVSLADLQADTDAERSFRKFRLIAEYVQGR 491
           MF  RQ+G T VNRTQG +IAS+ LKGR FEVSLADLQ D D ERSFRKFRLIAE VQ R
Sbjct: 38  MFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDR 97

Query: 490 NVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTC 311
           NVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTC
Sbjct: 98  NVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTC 157

Query: 310 YAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRK 131
           YAQ +QVR IR +M +IIT +V+ ++L+++VNKL  DSIAKDIEK+C  IYPL DV IRK
Sbjct: 158 YAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRK 217

Query: 130 VKVLKRPRFEISKLMELH 77
           VKVLK+PRF++SKL+ELH
Sbjct: 218 VKVLKKPRFDVSKLLELH 235


>Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal protein
           S3a protein.
          Length = 270

 Score =  287 bits (705), Expect = 7e-78
 Identities = 141/200 (70%), Positives = 162/200 (81%), Gaps = 2/200 (1%)
 Frame = -2

Query: 670 MFSKRQVGTTXVNRTQGTKIASEGLKGRXFEVSLA-DLQADTDAERSFRKFRLIAEYVQG 494
           MF  RQ+G T VNRTQG +IAS+  KGR FEVSL  DLQ D D E SFRKFRLIAE VQ 
Sbjct: 38  MFQTRQIGKTLVNRTQGQRIASDYFKGRVFEVSLVPDLQKDIDPEHSFRKFRLIAEDVQD 97

Query: 493 RNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKT 314
           RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKT
Sbjct: 98  RNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKT 157

Query: 313 CYAQHTQVRAIRK-KMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCI 137
           CYA  +QVR IR  +M +IIT +V+ ++L+++VNKL  DSIAKDIEK+C  IYPL DV I
Sbjct: 158 CYAHESQVRKIRSGRMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYI 217

Query: 136 RKVKVLKRPRFEISKLMELH 77
           RKVKVLK+PRF++SKL+ELH
Sbjct: 218 RKVKVLKKPRFDVSKLLELH 237


>AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB,
           isoform B protein.
          Length = 218

 Score =  269 bits (660), Expect = 2e-72
 Identities = 128/172 (74%), Positives = 146/172 (84%)
 Frame = -2

Query: 592 GRXFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 413
           GR FEVSLADLQ D D ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTL
Sbjct: 14  GRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTL 73

Query: 412 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSE 233
           IEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR IR +M +IIT +V+ ++
Sbjct: 74  IEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGAD 133

Query: 232 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 77
           L+++VNKL  DSIAKDIEK+C  IYPL DV IRKVKVLK+PRF++SKL+ELH
Sbjct: 134 LKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELH 185


>AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p
           protein.
          Length = 217

 Score =  227 bits (556), Expect = 8e-60
 Identities = 108/151 (71%), Positives = 125/151 (82%)
 Frame = -2

Query: 670 MFSKRQVGTTXVNRTQGTKIASEGLKGRXFEVSLADLQADTDAERSFRKFRLIAEYVQGR 491
           MF  RQ+G T VNRTQG +IAS+ LKGR FEVSLADLQ D D ERSFRKFRLIAE VQ R
Sbjct: 38  MFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDR 97

Query: 490 NVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTC 311
           NVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTC
Sbjct: 98  NVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTC 157

Query: 310 YAQHTQVRAIRKKMCEIITRDVTNSELREVV 218
           YAQ +QVR IR +M +IIT +V+ ++L++++
Sbjct: 158 YAQQSQVRKIRARMTDIITNEVSGADLKQLL 188


>AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD,
           isoform D protein.
          Length = 163

 Score =  198 bits (482), Expect = 7e-51
 Identities = 92/130 (70%), Positives = 110/130 (84%)
 Frame = -2

Query: 466 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVR 287
           MDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR
Sbjct: 1   MDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVR 60

Query: 286 AIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPR 107
            IR +M +IIT +V+ ++L+++VNKL  DSIAKDIEK+C  IYPL DV IRKVKVLK+PR
Sbjct: 61  KIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPR 120

Query: 106 FEISKLMELH 77
           F++SKL+ELH
Sbjct: 121 FDVSKLLELH 130


>AE013599-2921|AAF57537.1|  632|Drosophila melanogaster CG15904-PA
           protein.
          Length = 632

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +2

Query: 134 SDANIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSDC 286
           + AN+      M  LLD++  GV   L+H   E     V    +   ++DC
Sbjct: 264 TSANVTADYLNMTNLLDLVSQGVYETLIHSFTEITTKFVVSYSYPIGINDC 314


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,808,996
Number of Sequences: 53049
Number of extensions: 664235
Number of successful extensions: 1893
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1891
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2910007350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)