Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_H12
(828 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0523 + 18150425-18150629,18150822-18150881,18150882-181509... 33 0.28
05_04_0046 - 17482792-17483124 32 0.48
04_04_1479 - 33888521-33888853 32 0.48
02_01_0223 + 1453478-1453750,1455788-1456018,1456066-1456200,145... 29 3.4
01_01_0257 + 2097785-2097797,2098080-2098189,2098299-2098392,209... 29 3.4
01_01_0089 - 699533-699643,699738-700046,700134-700220,700298-70... 29 3.4
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859... 29 4.5
06_03_1119 + 27760412-27760527,27760851-27761010,27761283-277614... 29 6.0
>08_02_0523 +
18150425-18150629,18150822-18150881,18150882-18150967,
18151802-18151948,18152712-18152835,18152990-18153366
Length = 332
Score = 33.1 bits (72), Expect = 0.28
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -3
Query: 430 NKSSMCRFCYQTDKWEHRCEQKANCNSLASPLKYYLTNCTVSDDVICLGKRRFLKK 263
+ + CR C +TD E C + +CNS Y++T + +C G ++F+ +
Sbjct: 53 SSAGCCRICLETDS-ELDCNKYKSCNSTFFVHAYHVTGDELISPCMCKGTQQFVHR 107
>05_04_0046 - 17482792-17483124
Length = 110
Score = 32.3 bits (70), Expect = 0.48
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = -3
Query: 553 CSSLLYPCITCNRSIDCRYGGFYNYTCTVKPKVVCQGLKTFNKSSMCRFCYQTDKWEHRC 374
C S + PC +C YG F C V+C G+ + + C+ C Q +K C
Sbjct: 33 CDSYVRPCTLVRVCDECNYGSFQG-RC-----VICGGV-GISDAYYCKECTQQEKDRDGC 85
Query: 373 EQKANCNSLASPLKY 329
+ N S + L Y
Sbjct: 86 PKIVNLGSAKTDLFY 100
>04_04_1479 - 33888521-33888853
Length = 110
Score = 32.3 bits (70), Expect = 0.48
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = -3
Query: 553 CSSLLYPCITCNRSIDCRYGGFYNYTCTVKPKVVCQGLKTFNKSSMCRFCYQTDKWEHRC 374
C S + PC +C YG F C V+C G+ + + C+ C Q +K C
Sbjct: 33 CDSYVRPCTLVRVCDECNYGSFQG-RC-----VICGGV-GISDAYYCKECTQQEKDRDGC 85
Query: 373 EQKANCNSLASPLKY 329
+ N S + L Y
Sbjct: 86 PKIVNLGSAKTDLFY 100
>02_01_0223 +
1453478-1453750,1455788-1456018,1456066-1456200,
1457918-1457971,1458417-1458482,1458593-1458679,
1459338-1459394,1459470-1459500,1459577-1459634,
1459710-1459761,1459881-1459917,1460008-1460210,
1460556-1460633,1460683-1460853,1461126-1461239
Length = 548
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -3
Query: 688 ANNNMDFHSKENKIKGD-SNDKGVSFSENEEYIKSCPS 578
AN+ D HSKEN +K D S+ G+S + + + P+
Sbjct: 344 ANSQNDSHSKENDVKEDGSSQNGISHTALNQNMSMAPT 381
>01_01_0257 +
2097785-2097797,2098080-2098189,2098299-2098392,
2098786-2098974,2099061-2099120,2099231-2099391
Length = 208
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -3
Query: 310 VSDDVICLGKRRFLKKVRCSWTSG-TRW 230
V+ DVIC G++ FLK R S+ SG T W
Sbjct: 46 VTGDVICHGEKSFLKDGRKSFPSGHTSW 73
>01_01_0089 - 699533-699643,699738-700046,700134-700220,700298-700469,
700547-701373,701487-701559,701993-702078,702153-702227,
702308-702548,702905-703239,703328-703414,703497-703640,
703714-704670
Length = 1167
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 694 DMANNNMDFHSKENKIKGDSNDKGVSFSENE-EYIKSC 584
++ N +D K NK+ GD N K VSF E + SC
Sbjct: 1062 EIKNFALDLGKKLNKVLGDCNYKTVSFDEKSLSFFPSC 1099
>11_06_0561 -
24984960-24985205,24985283-24985354,24985906-24985977,
24986612-24986782,24987464-24987653,24987733-24987976,
24988162-24988474,24988687-24989517,24989628-24989672,
24989677-24989790,24989877-24990371,24990627-24990824,
24990902-24991357
Length = 1148
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/73 (27%), Positives = 29/73 (39%)
Frame = -3
Query: 607 NEEYIKSCPSVDQENMTECSSLLYPCITCNRSIDCRYGGFYNYTCTVKPKVVCQGLKTFN 428
N E IK+C + + N+ + LY CI RS G K K G +
Sbjct: 458 NSESIKNCNKLHEMNLENRAQALYCCIFLWRSFVKELGFVLGLKPYCKEKCDHDGCTICS 517
Query: 427 KSSMCRFCYQTDK 389
KS + F + + K
Sbjct: 518 KSKLAVFSFSSFK 530
>06_03_1119 +
27760412-27760527,27760851-27761010,27761283-27761449,
27761525-27761629,27762097-27762864,27762942-27763131,
27763763-27763940,27764106-27764497
Length = 691
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +1
Query: 400 DSKIYTLSFC*KFLTLDKLLLVSLYMYNYRNLHICNLYSGYMLYKGTVKKNIQSYSLDQL 579
+ K+ + F +F LDKLL V RN H N + G ++ Y++D++
Sbjct: 115 NQKLAPVDFKCEFGLLDKLLKVDA-----RNFHGWNYRRFLARFMGVPEEEELKYTMDKI 169
Query: 580 TDNF 591
+DNF
Sbjct: 170 SDNF 173
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,936,947
Number of Sequences: 37544
Number of extensions: 398951
Number of successful extensions: 952
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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