Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_H12
(828 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003740-5|AAL08031.1| 195|Caenorhabditis elegans Hypothetical ... 134 1e-31
L14745-13|AAR25658.1| 210|Caenorhabditis elegans Hypothetical p... 55 5e-08
AL161712-16|CAC35892.1| 329|Caenorhabditis elegans Hypothetical... 52 5e-07
Z66522-1|CAA91406.3| 425|Caenorhabditis elegans Hypothetical pr... 33 0.19
U00048-11|AAB53833.1| 995|Caenorhabditis elegans Hypothetical p... 31 0.76
Z81463-7|CAE17701.1| 172|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z69661-3|CAA93490.1| 293|Caenorhabditis elegans Hypothetical pr... 29 4.1
U28944-12|AAA68371.2| 363|Caenorhabditis elegans Hypothetical p... 29 5.4
AF125455-2|AAP13747.2| 431|Caenorhabditis elegans Hypothetical ... 29 5.4
Z81563-2|CAB04564.1| 181|Caenorhabditis elegans Hypothetical pr... 28 7.1
U97193-14|AAB52442.2| 381|Caenorhabditis elegans Ring finger pr... 28 7.1
Z92804-1|CAB07252.1| 338|Caenorhabditis elegans Hypothetical pr... 28 9.4
U53154-4|AAC25851.1| 346|Caenorhabditis elegans Hypothetical pr... 28 9.4
U41530-1|AAA83273.3| 636|Caenorhabditis elegans Hypothetical pr... 28 9.4
U23526-1|AAK95866.1| 252|Caenorhabditis elegans Claudin-like in... 28 9.4
AF252604-1|AAF67350.1| 252|Caenorhabditis elegans Gas3/PMP22-li... 28 9.4
>AF003740-5|AAL08031.1| 195|Caenorhabditis elegans Hypothetical
protein C41D11.9 protein.
Length = 195
Score = 134 bits (323), Expect = 1e-31
Identities = 65/158 (41%), Positives = 88/158 (55%)
Frame = -3
Query: 529 ITCNRSIDCRYGGFYNYTCTVKPKVVCQGLKTFNKSSMCRFCYQTDKWEHRCEQKANCNS 350
+TC DCR G CT + K + N ++CRFC+Q ++ CE NC++
Sbjct: 38 LTCTFPGDCRIGDTVKVNCTSR-KGCPNPVSRNNVEAVCRFCWQLLPGDYDCEPATNCST 96
Query: 349 LASPLKYYLTNCTVSDDVICLGKRRFLKKVRCSWTSGTRWXXXXXXXXXXXXXXADRFYL 170
S K +T C+ VIC+G+R F K++ C+W+SG W ADRFYL
Sbjct: 97 --SSTKLLVTKCSAHSSVICMGQRNFYKRIPCNWSSGYSWTKTMILSVVLGGFGADRFYL 154
Query: 169 GHWQEGIGKLFSFGGLGVWTLVDALLIGRHHLGPADGA 56
G W+ IGKLFSFGGLGVWTLVD +LI ++ P DG+
Sbjct: 155 GLWKSAIGKLFSFGGLGVWTLVDVVLIAVGYIKPYDGS 192
>L14745-13|AAR25658.1| 210|Caenorhabditis elegans Hypothetical
protein C02F5.13 protein.
Length = 210
Score = 55.2 bits (127), Expect = 5e-08
Identities = 30/95 (31%), Positives = 42/95 (44%)
Frame = -3
Query: 346 ASPLKYYLTNCTVSDDVICLGKRRFLKKVRCSWTSGTRWXXXXXXXXXXXXXXADRFYLG 167
A +++ C V + C G R F K C +G + DRF LG
Sbjct: 108 AEDVEFTNVKCRVLPCIECHGPRTFTKSTPCIIYNGHYFLTTLLYSIFLGVVAVDRFCLG 167
Query: 166 HWQEGIGKLFSFGGLGVWTLVDALLIGRHHLGPAD 62
+ +GKL + GG G+W +VD L+ LGPAD
Sbjct: 168 YSAMAVGKLMTLGGFGIWWIVDIFLLVLGVLGPAD 202
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 490 FYNYTCTVKPKVVCQGLKTFNKSSMC 413
F N C V P + C G +TF KS+ C
Sbjct: 113 FTNVKCRVLPCIECHGPRTFTKSTPC 138
>AL161712-16|CAC35892.1| 329|Caenorhabditis elegans Hypothetical
protein Y66D12A.21 protein.
Length = 329
Score = 52.0 bits (119), Expect = 5e-07
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Frame = -3
Query: 316 CTVSDDVICLGKRRF-----LKKVRCSWTSGTRWXXXXXXXXXXXXXXADRFYLGHWQEG 152
C ++ + C+GK +F C + + + DR YLG++ G
Sbjct: 57 CETAEHIKCVGKDQFGIFNRTVPSACHYGAHVSYTTTVLLSIFLGFFGIDRIYLGYYALG 116
Query: 151 IGKLFSFGGLGVWTLVDALLIGRHHLGPADG 59
+ K+FS GGL V+ LVD +LI LGPADG
Sbjct: 117 LIKMFSLGGLFVFWLVDIILISLQLLGPADG 147
>Z66522-1|CAA91406.3| 425|Caenorhabditis elegans Hypothetical
protein F14E5.3 protein.
Length = 425
Score = 33.5 bits (73), Expect = 0.19
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3
Query: 628 KGVSFSENEEYIKSCPSVDQENMTECSSLLYPCITCNRSI 509
+G +F+ N IK CP ++ N E ++LY C+ N SI
Sbjct: 195 RGCNFTRNSR-IKQCPKTEKVNRDEMYAVLYECMGGNHSI 233
>U00048-11|AAB53833.1| 995|Caenorhabditis elegans Hypothetical
protein C05D11.1 protein.
Length = 995
Score = 31.5 bits (68), Expect = 0.76
Identities = 24/89 (26%), Positives = 42/89 (47%)
Frame = -3
Query: 799 NALISSMHRTLPLRISIRDCFILILLVIMNTIHVTDMANNNMDFHSKENKIKGDSNDKGV 620
NA + H L D F+ +L V +N + +T M + F ++ + I G+ ND GV
Sbjct: 92 NAWTDTDHTAYTLSTVGSDGFLKVLPVYINHL-LTPMLTASQ-FATEVHHITGEGNDAGV 149
Query: 619 SFSENEEYIKSCPSVDQENMTECSSLLYP 533
+SE +++ S+ E ++YP
Sbjct: 150 VYSEMQDHESEMESIMDRKTKE---VIYP 175
>Z81463-7|CAE17701.1| 172|Caenorhabditis elegans Hypothetical
protein C06B8.11 protein.
Length = 172
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Frame = -3
Query: 673 DFHSKENK--IKGDSNDKGV-SFSENEEYIKSCPSVDQENMTECSSLLYPCITCNRSIDC 503
DF N + G +GV ++ + +++ P+ D C S Y C++ I+
Sbjct: 60 DFRCAANSKSLGGHCQIEGVQTYGDKYRFLRGIPAFDCGKNGVCLSSPYYNFCCDKRIED 119
Query: 502 RYGGFYNYTCTVKPKVVCQGLKTF---NKSSMCRFC 404
+Y ++ C KVV G + KS FC
Sbjct: 120 KYNADFDPKCARGTKVVKDGESGYILRGKSCKSNFC 155
>Z69661-3|CAA93490.1| 293|Caenorhabditis elegans Hypothetical
protein F48F7.5 protein.
Length = 293
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Frame = -3
Query: 697 TDMANNNMDFHSKENKIKGDSNDK-GVSFSENEE----YIKSCPSVDQENMTE 554
TD+ +++D + +E ++ +SND F E +E Y++ P+ D+E + E
Sbjct: 231 TDLEGSDVDENREEKELIDESNDSDDTEFEEEDEYETDYVEDEPTFDEETIPE 283
>U28944-12|AAA68371.2| 363|Caenorhabditis elegans Hypothetical
protein C18A3.2 protein.
Length = 363
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 166 HWQEGIGKLFSFGGLGVWTLVDALLIGRHH 77
HW + LF G+G++ ++ + LIG HH
Sbjct: 335 HWISLVKSLFVAAGIGIFVIIKS-LIGEHH 363
>AF125455-2|AAP13747.2| 431|Caenorhabditis elegans Hypothetical
protein Y48A5A.1 protein.
Length = 431
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -3
Query: 409 FCY--QTDKWEHRCEQKANCNSLASPLKYYLTNCTVSDDVICLGKR 278
+CY + + WE CE NC L+ L ++ +V + ++ +R
Sbjct: 267 YCYDQRVNDWESACESGWNCAKLSPSLSFFAKFSSVKECLLACTRR 312
>Z81563-2|CAB04564.1| 181|Caenorhabditis elegans Hypothetical
protein K04H8.2 protein.
Length = 181
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 565 NMTECSSLLYPCIT-CNRSIDCRYGGFYNYTC 473
N TE + C+T C+ +DC GF N TC
Sbjct: 60 NFTEKTVNWSSCVTNCHNKLDCIVAGFENGTC 91
>U97193-14|AAB52442.2| 381|Caenorhabditis elegans Ring finger
protein protein 1 protein.
Length = 381
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -3
Query: 670 FHSKENKIKGDSNDKGVSFSENEEYIKSCPSVDQENMTECSSLLYPCI 527
F + + I S G SF N E CP D +N++ECS YP +
Sbjct: 262 FGNDNDSISQVSTTSG-SFG-NHENDHFCPFSDDDNISECSDDYYPTL 307
>Z92804-1|CAB07252.1| 338|Caenorhabditis elegans Hypothetical
protein K05D4.2 protein.
Length = 338
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -3
Query: 763 LRISIRDCFILILLVIMN 710
LR S+R+CF+ ILLV+ N
Sbjct: 127 LRFSLRNCFLWILLVLSN 144
>U53154-4|AAC25851.1| 346|Caenorhabditis elegans Hypothetical
protein C33G8.9 protein.
Length = 346
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 490 FYNYTCTVKPKVVCQGLKTFNKSSMCRFC 404
F Y + KP++ C + F+ S CR+C
Sbjct: 27 FRRYVNSKKPQIECTCSQKFDSSGPCRYC 55
>U41530-1|AAA83273.3| 636|Caenorhabditis elegans Hypothetical
protein SSSD1.1 protein.
Length = 636
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 622 VSFSENEEYIKSCPSVDQENMTECSSLLYPCITCN 518
+++S NE+ I + P + N+ E LY C+ N
Sbjct: 73 ITWSRNEQIISTSPVLTLSNLEEGDKGLYTCLAVN 107
>U23526-1|AAK95866.1| 252|Caenorhabditis elegans Claudin-like in
caenorhabditisprotein 2 protein.
Length = 252
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = -3
Query: 790 ISSMHRTLPLRISIRDCFILILLVIMNTIHVTDMANNNMDFHSKEN 653
I HR I++ F+ ++ +I++ +HV A N+ S++N
Sbjct: 162 IYEKHRGYSWYIALTGAFVYLVAIILSVVHVLLQARNSNTTMSRQN 207
>AF252604-1|AAF67350.1| 252|Caenorhabditis elegans Gas3/PMP22-like
protein protein.
Length = 252
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = -3
Query: 790 ISSMHRTLPLRISIRDCFILILLVIMNTIHVTDMANNNMDFHSKEN 653
I HR I++ F+ ++ +I++ +HV A N+ S++N
Sbjct: 162 IYEKHRGYSWYIALTGAFVYLVAIILSVVHVLLQARNSNTTMSRQN 207
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,031,334
Number of Sequences: 27780
Number of extensions: 384134
Number of successful extensions: 1065
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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