Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_H06
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 262 3e-71
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 133 2e-32
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 120 2e-28
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 111 8e-26
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 95 8e-21
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 77 2e-15
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 73 5e-14
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 70 3e-13
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 1e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.3
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 5.3
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 7.0
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 9.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 262 bits (642), Expect = 3e-71
Identities = 120/136 (88%), Positives = 126/136 (92%)
Frame = -2
Query: 642 YELPDGQVIXIGNERFRCPEALFQPSXLGMEACGIHETTYNSIMKCDVDIRKDLYANTVL 463
YELPDGQVI IGNERFR PEALFQPS LG+E GIHE TYNSIMKCDVDIRKDLY N V+
Sbjct: 240 YELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVM 299
Query: 462 SGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 283
SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISK
Sbjct: 300 SGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISK 359
Query: 282 QEYDESGPSIVHRKCF 235
QEYDESGP IV+RKCF
Sbjct: 360 QEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 133 bits (322), Expect = 2e-32
Identities = 60/136 (44%), Positives = 91/136 (66%)
Frame = -2
Query: 642 YELPDGQVIXIGNERFRCPEALFQPSXLGMEACGIHETTYNSIMKCDVDIRKDLYANTVL 463
Y+LPD Q I +G E F PE LF P +G EA G+H + SI+ D+D+R LY+N VL
Sbjct: 245 YQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVL 304
Query: 462 SGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 283
SGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+
Sbjct: 305 SGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITS 364
Query: 282 QEYDESGPSIVHRKCF 235
+EY ++ +++ R+ F
Sbjct: 365 EEY-KNDQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 120 bits (289), Expect = 2e-28
Identities = 62/139 (44%), Positives = 90/139 (64%), Gaps = 12/139 (8%)
Frame = -2
Query: 642 YELPDGQVIXIGNERFRCPEALFQPSXLGMEACGIHETTYNSIMKCDVDIRKDLYANTVL 463
Y LPDG+VI +G+ER+ CPE LFQP +G E G+ E +++I DVDIRK LY VL
Sbjct: 240 YTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVL 299
Query: 462 SGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSILAS 316
SGG++MY G+ R++KEI L P+ + K+KI P R+++V+IGG++LA
Sbjct: 300 SGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLAD 359
Query: 315 -LSTFQQMWISKQEYDESG 262
++ MW+SK E++E G
Sbjct: 360 IMAQNDHMWVSKAEWEEYG 378
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 111 bits (267), Expect = 8e-26
Identities = 58/138 (42%), Positives = 78/138 (56%), Gaps = 11/138 (7%)
Frame = -2
Query: 642 YELPDGQVIXIGNERFRCPEALFQPSXLGMEAC---------GIHETTYNSIMKCDVDIR 490
+E PDG G ERFR E LF PS + G+HE Y SI+ CD ++R
Sbjct: 281 FEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELR 340
Query: 489 KDLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII-APPERKYSVWIGGSILAS 316
L N V++GGT++ PG+++R+Q E+ LA S + + +VW GGSILAS
Sbjct: 341 SPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILAS 400
Query: 315 LSTFQQMWISKQEYDESG 262
L FQ +W+SKQEYDE G
Sbjct: 401 LDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 95.1 bits (226), Expect = 8e-21
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Frame = -2
Query: 543 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 364
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 363 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 238
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 77.4 bits (182), Expect = 2e-15
Identities = 42/128 (32%), Positives = 64/128 (50%)
Frame = -2
Query: 624 QVIXIGNERFRCPEALFQPSXLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTM 445
QV+ + NERF PE LF PS + + GI E S+ +I+ L N V GG
Sbjct: 272 QVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCK 331
Query: 444 YPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDES 265
+PG R+ E+ +LAP+ ++K+ P + W S + L + I++ EY E
Sbjct: 332 FPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEH 390
Query: 264 GPSIVHRK 241
G +I+ RK
Sbjct: 391 GANIMTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 72.5 bits (170), Expect = 5e-14
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 15/140 (10%)
Frame = -2
Query: 618 IXIGNERFRCPEALFQPSXLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 442
I +G ERF PE F P + + E N + +D+RK LY N VLSGG+T++
Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339
Query: 441 PGIADRMQKEITALAPST--------------MKIKIIAPPERKYSVWIGGSILASLSTF 304
+R+Q+++ + + + +I+ ++ +VW GGS+LA F
Sbjct: 340 KNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEF 399
Query: 303 QQMWISKQEYDESGPSIVHR 244
+K +Y+E G SI R
Sbjct: 400 GSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 69.7 bits (163), Expect = 3e-13
Identities = 31/118 (26%), Positives = 62/118 (52%)
Frame = -2
Query: 603 ERFRCPEALFQPSXLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 424
E+ R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 423 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 250
+++E+T++ P I + W G S + F+ ++++EY E GP +
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 1e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -2
Query: 489 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 319
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 318 SLSTFQQMWISKQEYDESGPSIVHRK 241
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -2
Query: 342 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 241
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 350 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 255
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 417 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 307
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 7.0
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -1
Query: 460 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 281
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 280 GV 275
V
Sbjct: 534 AV 535
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 283 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 369
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,558,217
Number of Sequences: 5004
Number of extensions: 50989
Number of successful extensions: 145
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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