Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_H05
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    29   3.1  
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962...    28   7.1  
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534...    27   9.4  
11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532...    27   9.4  
06_01_1181 + 10148653-10149405                                         27   9.4  

>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 22/70 (31%), Positives = 28/70 (40%)
 Frame = -3

Query: 429  YRPTRRSVFPELLSTYPYSKSIYDDPIAAAERITVPGYRYLPVHREIYGYSPRPIYAHNY 250
            Y PT  +  P   S  P S S    P + +   T P Y Y P       YSP    ++NY
Sbjct: 1683 YNPTSSAYSPTSPSYNPTSPSYSYSPTSPSYSPTSPSYSYSPTSP---SYSPTS-PSYNY 1738

Query: 249  PRSLDYYRPT 220
              +   Y PT
Sbjct: 1739 SPTSPSYSPT 1748


>04_03_0024 -
           9623178-9624001,9624502-9624678,9625144-9625305,
           9625520-9626032,9626801-9629153
          Length = 1342

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 466 SKRFGRHQSRGKVQANTPQR-FSRTPVDLPLLQV-DLRRPYRCR 341
           SKR  +HQ+R      T +R F R PV LP  ++  +R P + +
Sbjct: 759 SKRIYKHQNRNNNNIRTKKRYFLRRPVRLPFKEILGIRIPVKVK 802


>11_01_0658 +
           5342508-5343602,5343697-5343764,5343994-5344042,
           5344217-5344333,5344438-5344506,5344631-5344725,
           5345580-5345658,5346499-5346563,5347368-5347461,
           5347675-5347744,5348363-5349357
          Length = 931

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 304 CPSRDLRLLPAPYLCPQLPSLSRLLQANPKSLRGSSNLKT 185
           C  R   L+P   + PQ+  L  ++Q    +++ S+NL T
Sbjct: 450 CARRHEELIPRRSIIPQVSQLGAVVQKYQSAVQNSTNLST 489


>11_01_0657 +
           5322295-5323367,5323436-5323555,5323743-5323791,
           5323968-5324084,5324200-5324268,5324394-5324488,
           5325183-5325521,5327043-5327084,5327814-5327907,
           5328121-5328190,5328719-5329677
          Length = 1008

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 304 CPSRDLRLLPAPYLCPQLPSLSRLLQANPKSLRGSSNLKT 185
           C  R   L+P   + PQ+  L  ++Q    +++ S+NL T
Sbjct: 460 CARRHEELIPRRSIIPQVSQLGAVVQKYQSAVQNSTNLST 499


>06_01_1181 + 10148653-10149405
          Length = 250

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -3

Query: 318 YRYLPVHREIYGYSPRPIYAHNYPRSLDYYRPTRKV 211
           +RY+ VH  +Y     P+  + YP ++    P   V
Sbjct: 155 FRYVQVHHPVYAAPGEPVQGYGYPVAMSSALPAPHV 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,493,090
Number of Sequences: 37544
Number of extensions: 325787
Number of successful extensions: 973
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)