Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_H04
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    30   0.32 
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    29   0.43 
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    27   2.3  
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    27   3.0  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    26   4.0  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   9.2  

>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 432 GSLFISIYPSPGYERFHKI--KSFGKITKTIKTIS 530
           G ++   YP P YE+  +I   ++GK+ K I T++
Sbjct: 265 GPIYTYTYPKPAYEKIDQIGEGTYGKVYKAINTVT 299


>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +3

Query: 201 KECTSCLPH*SYKSRYIL*YAQDNELRKKVNNFFFYRIQFQT 326
           KE TS +P+      YIL    D+  RKK NNF  ++I  Q+
Sbjct: 255 KELTSLVPNEKNPKEYILKLLFDHLNRKKTNNFNTHQILSQS 296


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 384 HDLTILFPKRGYKIDCGS 437
           HDL  LF KR ++ DCG+
Sbjct: 74  HDLVDLFNKRHFRCDCGT 91


>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 471 ERFHKIKSFGKITKTIKTIS 530
           +R   IK+  KITKTIKT++
Sbjct: 39  QRLKSIKNIEKITKTIKTVA 58


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 628 TSKAXNCLPPTCSRSVNSPSK 566
           TS+A N LPPT   S  +PSK
Sbjct: 19  TSRANNSLPPTPDSSPAAPSK 39


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +1

Query: 280 EKRSIIFFFTEFNSRLFAKL 339
           ++ S+I F+TEFN + F+++
Sbjct: 137 DQASVIRFYTEFNGKAFSQI 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,548
Number of Sequences: 5004
Number of extensions: 49108
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)