Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_H04
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0564 + 30003817-30005778                                         30   1.3  
05_01_0398 + 3142934-3143110,3143697-3143930,3144180-3144353,314...    27   9.5  
02_05_1082 - 33976038-33978035                                         27   9.5  

>02_05_0564 + 30003817-30005778
          Length = 653

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -2

Query: 144 FF*MFHIVLYLFYYVHSYYIIIXL---VXCSRHNIKVXYIHVFCTFFKW 7
           FF +  I L  FYYV  + +++ L   V C+  ++ + Y+H+    ++W
Sbjct: 529 FFILSSIWLGRFYYVFGFLLVVLLLLVVVCAEVSVVLTYMHLCAEDWRW 577


>05_01_0398 +
           3142934-3143110,3143697-3143930,3144180-3144353,
           3144450-3144554,3145274-3145351,3146019-3146100,
           3146519-3146681,3147100-3147435,3147511-3147641,
           3147687-3147729,3147826-3148444,3148523-3148588,
           3149103-3149265,3149557-3149635,3150232-3150431,
           3150972-3151144,3151466-3151559,3152353-3152444,
           3153146-3153436
          Length = 1099

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -3

Query: 344 VNNLANSLELNSVKKKIIDLFSQFVVLGILQNISRFVTLMWK 219
           +NNL   ++L  +KK +  +FSQF   G + ++  F TL  K
Sbjct: 873 INNLNEKIKLEELKKSLRAVFSQF---GKILDVLAFKTLKHK 911


>02_05_1082 - 33976038-33978035
          Length = 665

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -2

Query: 144 FF*MFHIVLYLFYYVHSYYIIIXL---VXCSRHNIKVXYIHVFCTFFKW 7
           FF M  I +   YYV  +  I+ L   + C+  ++ + Y+H+    +KW
Sbjct: 541 FFIMSSIWMGRVYYVFGFLFIVLLLLVIVCAEVSLVLTYMHLCVEDWKW 589


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,208,267
Number of Sequences: 37544
Number of extensions: 250671
Number of successful extensions: 461
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)