Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_H04
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068713-11|AAC17792.1|  315|Caenorhabditis elegans Serpentine r...    31   0.70 
AF016427-4|AAB65353.1|  774|Caenorhabditis elegans Hypothetical ...    29   2.1  
AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily a...    28   4.9  

>AF068713-11|AAC17792.1|  315|Caenorhabditis elegans Serpentine
           receptor, class i protein21 protein.
          Length = 315

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +1

Query: 283 KRSIIFFFTEFNSRLFAKLLTFLYFTAKNRSTYHTT*LYCFQNAVTKLTVVAYLYLFIRR 462
           K SIIF +  F   + A  +TF YFT  +RST        +     K   +    L++R 
Sbjct: 130 KSSIIFVWI-FTQIVIAVWVTFYYFTGMDRSTSLNIIAKNYPTLYPKFLELEDFQLYVRN 188

Query: 463 QATSVFI 483
           + T+ F+
Sbjct: 189 EITTCFL 195


>AF016427-4|AAB65353.1|  774|Caenorhabditis elegans Hypothetical
           protein F32D1.3 protein.
          Length = 774

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 280 EKRSIIFFFTEFNSR--LFAKLLTFLYFTAKNRSTYHTT*LYC 402
           E RS++F F  F +   L + LLT + F A  R  Y  T  YC
Sbjct: 336 ENRSLLFLFALFTTPHILSSNLLTHVGFVAAERILYLNTVAYC 378


>AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 123 protein.
          Length = 655

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -2

Query: 129 HIVLYLFYYVHSYYIIIXLVXCSRHNIKVXYIHVFCTFFKW 7
           H   Y+F ++   Y+I+ ++ CS   I + Y H+    + W
Sbjct: 541 HQTYYMFGFLFLVYLIL-IITCSEATILLAYFHLCAEDYHW 580


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,570,522
Number of Sequences: 27780
Number of extensions: 269809
Number of successful extensions: 547
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)