Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_G23
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    27   3.5  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.5  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    25   8.1  

>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 458 INPRLLFFVYLIANSLDRALSATHGWYVNLHSSTC 354
           INP        +   +D AL+   GW++  +SS C
Sbjct: 276 INPTGTSKALALDADIDAALTDKEGWFIQFYSSEC 310


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = +2

Query: 14  YTLIVLYHAIHSFPFSIPPSMHNHQNARGPPGNREPIQYCTTKHFSLLRQVYKV 175
           YT+ V+ H       +IP S H   N +GP G  E + Y     F L RQV +V
Sbjct: 203 YTIAVILHFSFVTVDAIPESPHLVSNRKGPEGVVERL-YNRIPWF-LTRQVLRV 254


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 131 NIESVHGFLAAPAHFDDCALKEELRMEMNGLH 36
           +I S H    AP H+DD  L E+  + + GLH
Sbjct: 463 SITSTHHPFTAP-HWDDVHLLEKKPLSVRGLH 493


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,922,328
Number of Sequences: 5004
Number of extensions: 58860
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)