Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_G23
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0104 - 8426374-8426542,8426656-8426828,8427020-8427103,842... 27 1.8
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 30 2.1
08_02_1288 + 25902264-25902431,25902506-25903090 29 2.8
05_07_0173 + 28140484-28140869,28141079-28141481,28141719-281417... 29 3.6
01_06_0004 + 25507739-25508206,25509346-25509477,25509910-255100... 29 4.8
01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547 28 6.4
04_03_0129 - 11554917-11555033,11555470-11555613,11555807-115559... 28 8.4
01_07_0238 + 42209407-42209964,42210039-42210561,42212577-422126... 28 8.4
>05_03_0104 - 8426374-8426542,8426656-8426828,8427020-8427103,
8427110-8427205,8427530-8427616,8428639-8428767,
8428922-8429098,8429185-8429295,8429642-8429761,
8430767-8432427,8432485-8432867,8433707-8434470,
8434532-8434813,8436158-8436493
Length = 1523
Score = 27.5 bits (58), Expect(2) = 1.8
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = +3
Query: 159 DKYIKYLLRFSRTVDIIKNHFHAVTVAVCSWKSAPSGKRTQTF 287
DK + YL R ++ ++K H +T +C W K+ +
Sbjct: 1324 DKILTYLNRIAQVKWVLKGHQKKITGLLCVWSMEDWAKKKSRY 1366
Score = 21.0 bits (42), Expect(2) = 1.8
Identities = 8/26 (30%), Positives = 11/26 (42%)
Frame = +3
Query: 75 CTIIKMRGGRQETVNRFNIVLQNTFL 152
C +I GG+ N N TF+
Sbjct: 1259 CYLISASGGKVSLFNMLNFKTMTTFI 1284
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 129 IVLQNTFLYLDKYIKYLLRFSRTVDIIKNHFHAVTVAVCSWKSA 260
I + N L ++++ +YLL V K FHA+ +A+C W+ A
Sbjct: 1182 IEVDNVTLLVEQFFEYLLNNHVVVQEPKYIFHALNIALC-WRVA 1224
>08_02_1288 + 25902264-25902431,25902506-25903090
Length = 250
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = -3
Query: 298 VWIWNVCVRLPLGALFQLHTATVTA*K*FLIMSTVRENRSKYFIYLSK*RKVFCSTIL 125
VW+W+V R PL + ++TAT + ++ +++N K + + R V + L
Sbjct: 25 VWLWHVVRRRPLSSTVGINTAT----RRLWVLGMMKDNEKKAVLVVQSMRNVIMGSTL 78
>05_07_0173 +
28140484-28140869,28141079-28141481,28141719-28141781,
28142350-28142535,28144695-28145076,28145689-28145780,
28145988-28146737,28146969-28147100,28147149-28147247,
28147977-28148132,28150187-28150317,28150798-28151254,
28151327-28151668,28152137-28153001,28153112-28153170,
28153806-28154261,28154835-28154873,28155016-28155201
Length = 1727
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 36 MQSIHFHSQFLLQCTIIKMRGG--RQETVNRFNIVLQNTFLYLDKYIKYLLRFSRTVDII 209
+QS+ + + TIIK +G +E ++ V LYL +Y K + + ++II
Sbjct: 153 VQSLQSQKLIVRRSTIIKFKGNGAEKEDASQNKRVTNTNSLYLTRYAKDCMNSHQRIEII 212
Query: 210 K 212
K
Sbjct: 213 K 213
>01_06_0004 +
25507739-25508206,25509346-25509477,25509910-25510086,
25510175-25510219,25510305-25510512,25510766-25510825,
25510826-25511016,25511219-25511614
Length = 558
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 597 PXVGSGLALPLALLKSMGDGNHSPSGGPYAPLPRKAIKKKLPFGA 463
P GSG A P + S G GN PS P P+ A+ + FGA
Sbjct: 103 PVNGSGHASPKSPTPSCGKGNQPPS-RPTPTSPQGAVFNVVDFGA 146
>01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547
Length = 388
Score = 28.3 bits (60), Expect = 6.4
Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 8/80 (10%)
Frame = -1
Query: 687 FSFGWFVAYHHCETGSIKSGH*LGSSSRVKPXVGSGLAL--------PLALLKSMGDGNH 532
F FG +G G + RV+ G G AL LA + GDG
Sbjct: 25 FGFGLAAMLRRMVVSDTDAGGGGGEAGRVRGGGGGGAALFAVPRLFVGLAAKRGAGDGGE 84
Query: 531 SPSGGPYAPLPRKAIKKKLP 472
S P +PL KA+ + P
Sbjct: 85 PASRSPTSPLDPKALLLRSP 104
>04_03_0129 -
11554917-11555033,11555470-11555613,11555807-11555999,
11556083-11556139,11556300-11556403,11556882-11556953,
11557069-11557187,11557639-11557783,11558527-11558672,
11558758-11558827,11559000-11559056,11559081-11559228,
11559311-11559432,11559649-11559845,11560296-11560350,
11560468-11560680,11561239-11561386,11561515-11561585,
11563286-11563316,11563532-11563623,11565621-11565688,
11567895-11568069
Length = 847
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 59 SIPPSMHNHQNARGPPGNREPIQYCTTKHF 148
S+PP N+ N + PP P +YC F
Sbjct: 51 SLPPDRPNYLNIQSPPSIYPPKRYCDITGF 80
>01_07_0238 +
42209407-42209964,42210039-42210561,42212577-42212665,
42212981-42213191,42213265-42213446,42213573-42213812,
42214691-42214878,42215230-42215323,42215407-42215463,
42215552-42215686,42216460-42216525,42216745-42216858,
42217849-42218010,42218093-42218221,42218323-42218424,
42219428-42219504,42219600-42219957
Length = 1094
Score = 27.9 bits (59), Expect = 8.4
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -2
Query: 551 PWATVTTHHQVGRMLLCLE 495
PW++VT HH G+++L +E
Sbjct: 904 PWSSVTKHHFKGKVVLIME 922
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,198,551
Number of Sequences: 37544
Number of extensions: 399722
Number of successful extensions: 935
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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