Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_G23
         (711 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC045552-1|AAH45552.1|  471|Homo sapiens FGD4 protein protein.         33   0.76 
AK057294-1|BAB71413.1|  766|Homo sapiens protein ( Homo sapiens ...    33   0.76 
AY367054-1|AAQ72372.1|  280|Homo sapiens actin-filament binding ...    33   1.3  

>BC045552-1|AAH45552.1|  471|Homo sapiens FGD4 protein protein.
          Length = 471

 Score = 33.5 bits (73), Expect = 0.76
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +3

Query: 30  STMQSIH-FHSQFLLQCTIIKMRGGRQETVNRFNIVLQNTFLYLDKYIKYLLRFSRTVDI 206
           S + SI+ FHS+FLL    ++ R    ET  R   +LQ    +L  Y +Y+  F   +++
Sbjct: 7   SNISSINAFHSKFLLP--ELEKRMQEWETTPRIGDILQKLAPFLKMYGEYVKGFDNAMEL 64

Query: 207 IKN 215
           +KN
Sbjct: 65  VKN 67


>AK057294-1|BAB71413.1|  766|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32732 fis, clone TESTI2001141, highly similar to
           Rattus norvegicus actin-filament binding protein Frabin
           mRNA. ).
          Length = 766

 Score = 33.5 bits (73), Expect = 0.76
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +3

Query: 30  STMQSIH-FHSQFLLQCTIIKMRGGRQETVNRFNIVLQNTFLYLDKYIKYLLRFSRTVDI 206
           S + SI+ FHS+FLL    ++ R    ET  R   +LQ    +L  Y +Y+  F   +++
Sbjct: 255 SNISSINAFHSKFLLP--ELEKRMQEWETTPRIGDILQKLAPFLKMYGEYVKGFDNAMEL 312

Query: 207 IKN 215
           +KN
Sbjct: 313 VKN 315


>AY367054-1|AAQ72372.1|  280|Homo sapiens actin-filament binding
           protein frabin protein.
          Length = 280

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +3

Query: 30  STMQSIH-FHSQFLLQCTIIKMRGGRQETVNRFNIVLQNTFLYLDKYIKYLLRFSRTVDI 206
           S + SI+ FHS+FLL    ++ R    ET  R   +LQ    +L  Y +Y   F   +++
Sbjct: 7   SNISSINAFHSKFLLP--ELEKRMQEWETTPRIGDILQKLAPFLKMYGEYAKGFDNAMEL 64

Query: 207 IKN 215
           +KN
Sbjct: 65  VKN 67


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,767,646
Number of Sequences: 237096
Number of extensions: 2267222
Number of successful extensions: 4819
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4813
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)