Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_G23
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000197-5|AAB52900.3|  579|Caenorhabditis elegans Hypothetical ...    32   0.47 
U10414-8|AAA19076.1|  272|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AL117204-8|CAB55123.1|  205|Caenorhabditis elegans Hypothetical ...    29   4.3  

>AF000197-5|AAB52900.3|  579|Caenorhabditis elegans Hypothetical
           protein T21G5.1 protein.
          Length = 579

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 16/68 (23%), Positives = 33/68 (48%)
 Frame = +3

Query: 57  SQFLLQCTIIKMRGGRQETVNRFNIVLQNTFLYLDKYIKYLLRFSRTVDIIKNHFHAVTV 236
           S+++L C + K++    +T+  FNI+     ++      + + FS +   +K+HFH    
Sbjct: 213 SEYVLDCAVKKLKQADSQTLTNFNILNFLVIVFWGCSRYFDVHFSISSITMKSHFHTTKK 272

Query: 237 AVCSWKSA 260
           +  S   A
Sbjct: 273 SFASMNRA 280


>U10414-8|AAA19076.1|  272|Caenorhabditis elegans Hypothetical
           protein F42A10.5 protein.
          Length = 272

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = -1

Query: 618 GSSSRVKPXVGSGLALPLALLKSMGDGNHSPSGGPYAPLPRKA 490
           GSS       GSG    LA LK M   N +P+    AP P  A
Sbjct: 208 GSSRSYPTTAGSGRDSALAALKMMSAANPAPARNEPAPAPAAA 250


>AL117204-8|CAB55123.1|  205|Caenorhabditis elegans Hypothetical
           protein Y116A8C.17 protein.
          Length = 205

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 146 SVL*YNIESVHGFLAAPAHFDDCALKEELRMEMNGLHGRARS 21
           SV+    ES H   +A A+ D C + +ELR EM  L  + ++
Sbjct: 51  SVILQENESAHKLSSAIANCDPCTISDELREEMMRLKKKEKA 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,432,414
Number of Sequences: 27780
Number of extensions: 346637
Number of successful extensions: 832
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)