Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_G21
         (573 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC054492-1|AAH54492.1|  997|Homo sapiens RABGAP1 protein protein.      30   6.7  
AL365338-3|CAH70298.1|  997|Homo sapiens RAB GTPase activating p...    30   6.7  
AJ011679-1|CAB40267.2|  997|Homo sapiens Rab6 GTPase activating ...    30   6.7  
BC146811-1|AAI46812.1|  854|Homo sapiens ZNF341 protein protein.       29   8.8  
BC132873-1|AAI32874.1|  854|Homo sapiens ZNF341 protein protein.       29   8.8  
BC094738-1|AAH94738.1|  795|Homo sapiens ZNF341 protein protein.       29   8.8  
AL050349-3|CAI21796.2|  847|Homo sapiens zinc finger protein 341...    29   8.8  
AK027550-1|BAB55193.1|  486|Homo sapiens protein ( Homo sapiens ...    29   8.8  

>BC054492-1|AAH54492.1|  997|Homo sapiens RABGAP1 protein protein.
          Length = 997

 Score = 29.9 bits (64), Expect = 6.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 478 CNMEISLKYFMKFTIDLHTVLSQRSMSQDQI 386
           CNM+IS K   K+  + HT+  Q++  +D I
Sbjct: 733 CNMKISQKKLKKYEKEYHTMREQQAQQEDPI 763


>AL365338-3|CAH70298.1|  997|Homo sapiens RAB GTPase activating
           protein 1 protein.
          Length = 997

 Score = 29.9 bits (64), Expect = 6.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 478 CNMEISLKYFMKFTIDLHTVLSQRSMSQDQI 386
           CNM+IS K   K+  + HT+  Q++  +D I
Sbjct: 733 CNMKISQKKLKKYEKEYHTMREQQAQQEDPI 763


>AJ011679-1|CAB40267.2|  997|Homo sapiens Rab6 GTPase activating
           protein, GAPCenA protein.
          Length = 997

 Score = 29.9 bits (64), Expect = 6.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 478 CNMEISLKYFMKFTIDLHTVLSQRSMSQDQI 386
           CNM+IS K   K+  + HT+  Q++  +D I
Sbjct: 733 CNMKISQKKLKKYEKEYHTMREQQAQQEDPI 763


>BC146811-1|AAI46812.1|  854|Homo sapiens ZNF341 protein protein.
          Length = 854

 Score = 29.5 bits (63), Expect = 8.8
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 437 SKFHKIFQRNFHVTKGKKSCIHLCIILYLRSIF---*TFLKHLK 559
           SKF   FQ   H+T+ K   ++ C++      F    TFL+H+K
Sbjct: 452 SKFSTYFQLKSHMTQHKNEQVYKCVVKSCAQTFPKLDTFLEHIK 495


>BC132873-1|AAI32874.1|  854|Homo sapiens ZNF341 protein protein.
          Length = 854

 Score = 29.5 bits (63), Expect = 8.8
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 437 SKFHKIFQRNFHVTKGKKSCIHLCIILYLRSIF---*TFLKHLK 559
           SKF   FQ   H+T+ K   ++ C++      F    TFL+H+K
Sbjct: 452 SKFSTYFQLKSHMTQHKNEQVYKCVVKSCAQTFPKLDTFLEHIK 495


>BC094738-1|AAH94738.1|  795|Homo sapiens ZNF341 protein protein.
          Length = 795

 Score = 29.5 bits (63), Expect = 8.8
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 437 SKFHKIFQRNFHVTKGKKSCIHLCIILYLRSIF---*TFLKHLK 559
           SKF   FQ   H+T+ K   ++ C++      F    TFL+H+K
Sbjct: 393 SKFSTYFQLKSHMTQHKNEQVYKCVVKSCAQTFPKLDTFLEHIK 436


>AL050349-3|CAI21796.2|  847|Homo sapiens zinc finger protein 341
           protein.
          Length = 847

 Score = 29.5 bits (63), Expect = 8.8
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 437 SKFHKIFQRNFHVTKGKKSCIHLCIILYLRSIF---*TFLKHLK 559
           SKF   FQ   H+T+ K   ++ C++      F    TFL+H+K
Sbjct: 445 SKFSTYFQLKSHMTQHKNEQVYKCVVKSCAQTFPKLDTFLEHIK 488


>AK027550-1|BAB55193.1|  486|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14644 fis, clone NT2RP2001756, weakly similar to
           ZINC FINGER PROTEIN 84. ).
          Length = 486

 Score = 29.5 bits (63), Expect = 8.8
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 437 SKFHKIFQRNFHVTKGKKSCIHLCIILYLRSIF---*TFLKHLK 559
           SKF   FQ   H+T+ K   ++ C++      F    TFL+H+K
Sbjct: 84  SKFSTYFQLKSHMTQHKNEQVYKCVVKSCAQTFPKLDTFLEHIK 127


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,037,446
Number of Sequences: 237096
Number of extensions: 1019155
Number of successful extensions: 1436
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1436
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5872755824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)