Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_G17
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    27   2.5  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    26   4.4  
SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   7.7  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   7.7  

>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 220 FSSELTIFHSMNLKISLNTNCNFLIFY 300
           F  +L  FH +  K++L   CN++I Y
Sbjct: 175 FERDLIPFHELYYKLALEGKCNYVIRY 201


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 151 KINILFLSFCV--TKDNLISLIKDFFSSELTIFH 246
           K+N LFLS C+  T  +L+SL K   S  LT  H
Sbjct: 278 KLNSLFLSKCIGLTDSSLLSLTK--LSQSLTTLH 309


>SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
 Frame = +1

Query: 4   NVISIESASLLKNFCXKNQAPIXFFNLI*KHFSLAKL*IYXXILHWSSLKINILFLSFCV 183
           +++S +   + K+FC  ++ P+ +F      FS+ ++ I    L      I  LF SF +
Sbjct: 13  HLLSSKRIEVKKSFCCSSEGPLFYFFFGSLTFSI-EVSILKETLEKPLQIITFLFFSF-L 70

Query: 184 TKDNLISLIKDFFSSELTIFHSMNLKISLNTNCNFLI----FYFTARIFLIIIYKN 339
           T  N +  +  F + E        +   LN + +F +    + F  R   ++I+ N
Sbjct: 71  TSFNDLPYVLSFSAPECVKNEIFKIPPPLNEHFSFPVKCCAYQFILRNRFLLIWCN 126


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 208 IKDFFSSELTIFHSMNLKISLNTNCNFLIFYFTARIFLIIIYKNI 342
           +KDF SS L +    N   +L  + +F +F+FT  +   II  N+
Sbjct: 280 LKDFNSSFLILGSRYNTLHNLLADGDFTLFHFTLFLLSKIILLNL 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,168,670
Number of Sequences: 5004
Number of extensions: 38247
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)