Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_G16
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    28   1.1  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   1.9  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    27   2.5  
SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subuni...    26   4.4  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   5.8  

>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
 Frame = -1

Query: 395 FLKDNMTTYYFYSKKLNLNDFYIIS*YENYFDDSHKMSNTLSWFLVYGRFGNSKTKKTVQ 216
           F  +++T       K +L    IIS Y N +  S KM   ++W      + N    KTV 
Sbjct: 352 FSSEHITKLIEQQIKPDLESMLIISEYLNEYKPSPKMRELINWL-----YSNFHLPKTV- 405

Query: 215 *RNDSFIIKLTSILFSLSIRYSK-HLLV 135
             +  F+ ++ S++F   + +SK HL +
Sbjct: 406 --SLHFLREVQSLVFRYPLLHSKIHLAI 431


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 369 VSSHIIFQ--EYLEMYTYIFHAVKYPIIKSRFEFYITYNPKMS 491
           V+S + +Q   Y  MY  +  A  +P IK +F  +  Y+P +S
Sbjct: 514 VTSPVCYQILTYFNMYRPLCFASIFPFIKQQFILFNDYSPMLS 556


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 25  VVSIDFKTCNLYISIYVIFVYSFHIHQLLSALSVRYMT 138
           V S+D K  ++Y+ +  +F Y F IH   S     Y T
Sbjct: 540 VSSLDVKKLDMYMHLCELFCYFFRIHDYWSRRFDTYKT 577


>SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subunit
           Nat3 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 263 RTMIGYLTFYGNHQNSFHINL 325
           RTM+ YL   GN +N+F ++L
Sbjct: 90  RTMMDYLETVGNSENAFFVDL 110


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = -1

Query: 299  DSHKMSNTLSWFLVYGRFGNSKTKKTVQ*RNDSFIIKLTSILFSLSIRYSKHLLVMYRTD 120
            DSHK S     +L+     +SK     +  ++   +KLT    ++ +   KH++    T 
Sbjct: 1331 DSHKTSIVCILYLLEVLLADSKKPDEFEFNSEDCSLKLTDGAITVDLASQKHIMSSVITL 1390

Query: 119  KALNN 105
             +LN+
Sbjct: 1391 LSLNS 1395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,531,420
Number of Sequences: 5004
Number of extensions: 50873
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)