Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_G16
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82261-5|CAH60756.1|  304|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AL021493-2|CAA16393.1|  382|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z50797-4|CAA90674.1|  339|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U40947-5|AAC48070.1|  505|Caenorhabditis elegans Inward rectifyi...    27   9.3  
AC024796-9|AAK29893.2|  454|Caenorhabditis elegans Hypothetical ...    27   9.3  

>Z82261-5|CAH60756.1|  304|Caenorhabditis elegans Hypothetical
           protein C35D6.9a protein.
          Length = 304

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +1

Query: 7   DLQCFYVVSIDFKT-CNLYISIYVIFVYSFHIHQLLSALSVRYMTRRCFEYRILNENKIE 183
           D+  F  + +D K   N + +IY++  ++F+I  +LSA+         F  R L+ N + 
Sbjct: 151 DIFIFVFIFVDAKEESNGFKTIYIVIFFTFNIFSILSAI---LHVPMYFSVRKLS-NLVS 206

Query: 184 VSLIMKESFLYWTVFLVL 237
           V     + F+ W    VL
Sbjct: 207 VKRSTPQRFILWQAITVL 224


>AL021493-2|CAA16393.1|  382|Caenorhabditis elegans Hypothetical
           protein Y51A2B.2 protein.
          Length = 382

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -1

Query: 269 WFLVYGRFGNSKTKKTVQ*RNDSFIIKLTSILFSLS 162
           +F  + R  NSKTKK +Q R   F+ +LT+  F +S
Sbjct: 87  YFWTHFRSENSKTKKEIQIRFFWFLTQLTTSTFIIS 122


>Z50797-4|CAA90674.1|  339|Caenorhabditis elegans Hypothetical
           protein T22H6.3 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
 Frame = -1

Query: 488 HFRVIGYVKLEPTFY---NRVFDCMENISIHFQVFLKDNMTTYYFYSKKLNLNDFYIIS* 318
           ++R I   + +  FY   NR+  C+   S  F +F    +  + F        D+Y    
Sbjct: 110 YYRYIAVCRPDKLFYFDGNRILYCL---SPCFLIFFVWTLNVFLFMKPDQEKEDYYYDVL 166

Query: 317 YENYFDDSHKMS 282
            + Y  DSHK+S
Sbjct: 167 MDGYGIDSHKVS 178


>U40947-5|AAC48070.1|  505|Caenorhabditis elegans Inward rectifying
           k (potassium)channel family protein 1 protein.
          Length = 505

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 380 MTTYYFYSKKLNLNDFYIIS*YENYFDDSHKMSNT 276
           M+   FYS K NL D+Y    +E+  +D+    +T
Sbjct: 389 MSPAEFYSSKPNLKDYYCHDSHEHKLEDNRSSDST 423


>AC024796-9|AAK29893.2|  454|Caenorhabditis elegans Hypothetical
           protein Y48G1C.1 protein.
          Length = 454

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -1

Query: 422 ENISIHFQVFLKDNMTTYYFYSKKLNLNDFYIIS*YENYFDDSHKMSNTLSW 267
           E + IH  +     ++  Y Y+K + L  F I++  +   DD H+   T+ W
Sbjct: 180 EVLPIHSSLPQTGLISPKYRYNKGVELRIFGIVNWIDFVLDDDHQTHRTMVW 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,604,974
Number of Sequences: 27780
Number of extensions: 273695
Number of successful extensions: 660
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)