Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_G12
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   2.6  
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    25   4.6  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   4.6  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    25   8.0  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   8.0  

>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 93   FFFKLTQILCITNLLRRSGLN 31
            FFFK+ Q+L +T  L+  G N
Sbjct: 1720 FFFKIIQVLFLTRELKHDGTN 1740


>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -1

Query: 458 YKEKLICILSILFLKNKLKKTIGNVSGASS*RYTDHISG 342
           Y+++      ++FL++ L +  GN+  +S   YT++ SG
Sbjct: 100 YRQRKSVYPMLMFLRSSLLRNFGNIGNSS--LYTENYSG 136


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -2

Query: 412  INSKKLSATFRGHPLDGTQITFPEGYRAVLVTETKRPLTEDAERKFQVTGGFKNFT 245
            + S K S T   + L+  Q T P+G       E    L +++ER  Q  GG K ++
Sbjct: 1734 LKSNKFSGT---NDLNFQQATKPDGSNKSSYMERLEKLKQNSERHLQSVGGKKVYS 1786


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 123 RGYSSSSLTVFFFKLTQILCITNLLRRSGL 34
           +G  SS  T F   L  ILC+   + R+GL
Sbjct: 325 KGTISSQATTFLLYLLVILCVGASVTRTGL 354


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
 Frame = -1

Query: 467 NEDYK----EKLICILSILFLKNKLKKTI 393
           N+DY+    E L+ + S +F+KNKL+  I
Sbjct: 886 NDDYQVLVCENLVGLFSCVFVKNKLQSKI 914


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,822,009
Number of Sequences: 5004
Number of extensions: 33236
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)