Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_G11
(453 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946 34 0.062
11_06_0464 + 23894893-23895077,23895148-23895706 30 1.0
07_01_1040 + 9054441-9056006 28 4.0
01_06_1199 + 35355690-35355732,35355793-35355930,35356366-353563... 28 4.0
03_05_0092 - 20714102-20717902 27 5.3
02_04_0454 + 23064081-23064139,23064297-23064366,23064553-230658... 27 5.3
03_03_0198 + 15361048-15361746,15361854-15361946,15362035-153621... 27 7.1
01_06_0968 + 33466574-33466607,33467087-33467115,33467438-334675... 27 7.1
10_06_0038 - 9958520-9958763,9959240-9959394 27 9.3
01_05_0747 - 24857965-24858393,24858502-24860063,24860176-24860245 27 9.3
>03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946
Length = 447
Score = 33.9 bits (74), Expect = 0.062
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 298 LKQTKRNAGHGVWTYRVPPPMPSKKSIRLAQ 206
L R AGH VW PPP P ++ ++LAQ
Sbjct: 118 LPHLPRGAGHEVWPPHHPPPPPQQQQLQLAQ 148
>11_06_0464 + 23894893-23895077,23895148-23895706
Length = 247
Score = 29.9 bits (64), Expect = 1.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 310 AGDSLKQTKRNAGHGVWTYRVPPPMPS 230
AGDS+ + + G W R PPP P+
Sbjct: 43 AGDSIDSCRFHVGDHAWRIRTPPPPPA 69
>07_01_1040 + 9054441-9056006
Length = 521
Score = 27.9 bits (59), Expect = 4.0
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +1
Query: 163 QCDTESTTSTIHQALELTESIFWKALVAVHGTSKLHVLHFVWFVSSCRQRFAAYGAE*LS 342
+C + S + A+ L ++ W A++ +G F FVS R F + L+
Sbjct: 163 KCGQVAEASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLFVSMMRHGFC---PDELT 219
Query: 343 LAKFLST 363
LA LS+
Sbjct: 220 LASLLSS 226
>01_06_1199 +
35355690-35355732,35355793-35355930,35356366-35356389,
35356450-35356587,35356974-35357056,35358881-35358922,
35359151-35359231,35359319-35359414,35359530-35359736,
35359810-35359963,35360170-35360373,35361037-35361921,
35362025-35362071
Length = 713
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 434 VQILGKCFTYSKI--NRGSQQITRNNVDKNFANESYSAP*AAKR 309
VQ+L +TY+ + N G+ ++++ + S SAP +AKR
Sbjct: 11 VQLLSLIYTYTSLYTNAGTSEVSKEQKISKISKGSTSAPESAKR 54
>03_05_0092 - 20714102-20717902
Length = 1266
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 284 TKCRTWSLDVPCTATNA 234
TKC +W L PC+ +NA
Sbjct: 836 TKCPSWMLKTPCSLSNA 852
>02_04_0454 +
23064081-23064139,23064297-23064366,23064553-23065815,
23065946-23066515
Length = 653
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 196 HQALELTESIFWKALVAVHGTSKLH 270
H EL +FW+ +VAV T +H
Sbjct: 191 HDVAELGVDLFWRIMVAVKATGAVH 215
>03_03_0198 +
15361048-15361746,15361854-15361946,15362035-15362102,
15362255-15362393,15362481-15362483
Length = 333
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = -3
Query: 277 AGHGVWTYRVPPPMPSKKSIRLAQGLG-GLCWWWILY 170
AG G + PP P+++ + L G G W W Y
Sbjct: 57 AGAGTSVHVWAPPRPARRPVLLLHGFGASTTWQWASY 93
>01_06_0968 +
33466574-33466607,33467087-33467115,33467438-33467595,
33468319-33468436,33468520-33468708,33469008-33469343,
33469468-33469569,33469696-33469890,33469993-33470155,
33470314-33470579,33470670-33470765,33470860-33471255,
33471403-33471501
Length = 726
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 241 PMPSKKSIRLAQGLGGLCWWWILYHIATEPEHIT 140
P+P +K+ L + L C W +L H + E +T
Sbjct: 512 PLPMRKTFDLLRNLTHRCKWDVLVHGSVVKEEVT 545
>10_06_0038 - 9958520-9958763,9959240-9959394
Length = 132
Score = 26.6 bits (56), Expect = 9.3
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = -3
Query: 199 GGLCWWWILYHIATEPEHI 143
GG+CWWW + P+ +
Sbjct: 97 GGVCWWWSMSASVGGPQQL 115
>01_05_0747 - 24857965-24858393,24858502-24860063,24860176-24860245
Length = 686
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +1
Query: 214 TESIFWKALVAVHGTSKLHVL----HFVWFVSSCRQRFAAY 324
++++ WK L + TS LHV H +W++S F ++
Sbjct: 320 SQAMLWKTLASAPPTSFLHVSPVVNHVLWWISLALMGFVSF 360
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,647,952
Number of Sequences: 37544
Number of extensions: 271637
Number of successful extensions: 777
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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