Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_G11
(453 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49910-1|CAA90118.1| 160|Caenorhabditis elegans Hypothetical pr... 40 6e-04
AF304128-1|AAG50241.1| 160|Caenorhabditis elegans NADH ubiquino... 40 6e-04
Z68108-1|CAA92134.1| 194|Caenorhabditis elegans Hypothetical pr... 30 0.91
Z92834-9|CAB07386.2| 192|Caenorhabditis elegans Hypothetical pr... 28 3.7
U40938-4|AAK68283.1| 447|Caenorhabditis elegans Cyclophilin fam... 28 3.7
U40938-3|AAA81696.1| 466|Caenorhabditis elegans Cyclophilin fam... 28 3.7
U31078-1|AAC47130.1| 466|Caenorhabditis elegans cyclophilin iso... 28 3.7
U41105-7|AAA82402.2| 184|Caenorhabditis elegans Hypothetical pr... 27 4.8
AC026301-8|AAK68889.1| 302|Caenorhabditis elegans Hypothetical ... 27 4.8
AC006656-6|AAF39879.1| 614|Caenorhabditis elegans Fem-3 mrna bi... 27 6.4
Z99277-6|CAB16484.1| 677|Caenorhabditis elegans Hypothetical pr... 27 8.4
>Z49910-1|CAA90118.1| 160|Caenorhabditis elegans Hypothetical
protein F44G4.2 protein.
Length = 160
Score = 40.3 bits (90), Expect = 6e-04
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -3
Query: 202 LGGLCWWWILYHIATEPEHITGEW--PYIDPSTWTDEELGIP 83
+ + W W YH+ H+ G W PY+ S +TDEELGIP
Sbjct: 100 ISAVIWAWFSYHMYYHSGHLLGHWYMPYL--SEFTDEELGIP 139
>AF304128-1|AAG50241.1| 160|Caenorhabditis elegans NADH ubiquinone
oxidoreductaseAGGG subunit protein.
Length = 160
Score = 40.3 bits (90), Expect = 6e-04
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -3
Query: 202 LGGLCWWWILYHIATEPEHITGEW--PYIDPSTWTDEELGIP 83
+ + W W YH+ H+ G W PY+ S +TDEELGIP
Sbjct: 100 ISAVIWAWFSYHMYYHSGHLLGHWYMPYL--SEFTDEELGIP 139
>Z68108-1|CAA92134.1| 194|Caenorhabditis elegans Hypothetical
protein T05A10.2 protein.
Length = 194
Score = 29.9 bits (64), Expect = 0.91
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 265 LHVLHFVW-FVSSCRQRFAAYGAE*LSLAKFLSTLFLVI 378
L ++ FVW F++SC F Y LS FL T+FL +
Sbjct: 91 LEIVAFVWNFLTSCTCCFKKYLLHPLSPLSFLITIFLTV 129
>Z92834-9|CAB07386.2| 192|Caenorhabditis elegans Hypothetical
protein F39B2.5 protein.
Length = 192
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +2
Query: 107 PCTGINIRPLTSYMLRFSCNVIQNPPPAQSTKPL 208
P T + P Y+ RF+ Q PP T PL
Sbjct: 125 PLTKRELLPSLQYLCRFTLKTSQQKPPTPKTAPL 158
>U40938-4|AAK68283.1| 447|Caenorhabditis elegans Cyclophilin family
protein 8, isoformb protein.
Length = 447
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 99 KSLEFRPEDKQGRQEKHDKAKKEEXGQGEPR 7
+S E + +DK GR+EK D+ ++ G R
Sbjct: 218 ESREEKKKDKHGREEKRDRRRRSNDRHGRDR 248
>U40938-3|AAA81696.1| 466|Caenorhabditis elegans Cyclophilin family
protein 8, isoforma protein.
Length = 466
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 99 KSLEFRPEDKQGRQEKHDKAKKEEXGQGEPR 7
+S E + +DK GR+EK D+ ++ G R
Sbjct: 218 ESREEKKKDKHGREEKRDRRRRSNDRHGRDR 248
>U31078-1|AAC47130.1| 466|Caenorhabditis elegans cyclophilin
isoform 8 protein.
Length = 466
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 99 KSLEFRPEDKQGRQEKHDKAKKEEXGQGEPR 7
+S E + +DK GR+EK D+ ++ G R
Sbjct: 218 ESREEKKKDKHGREEKRDRRRRSNDRHGRDR 248
>U41105-7|AAA82402.2| 184|Caenorhabditis elegans Hypothetical
protein T02G5.11 protein.
Length = 184
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 146 MLRFSCNVIQNPPPAQ 193
MLR C+ QNPPPA+
Sbjct: 1 MLRDDCDTTQNPPPAE 16
>AC026301-8|AAK68889.1| 302|Caenorhabditis elegans Hypothetical
protein Y54F10BM.10 protein.
Length = 302
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 416 CFTYSKINRGSQQITRNNVDKNFANESY 333
C Y++ + S +T N ++KNF E+Y
Sbjct: 74 CTKYAEASNDSTILTHNKLEKNFDGENY 101
>AC006656-6|AAF39879.1| 614|Caenorhabditis elegans Fem-3 mrna
binding factor protein 1 protein.
Length = 614
Score = 27.1 bits (57), Expect = 6.4
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -2
Query: 386 SQQITRNNVDKNFANESYSAP*AAKRWRQLETNQTKCRTWSLD 258
S +I RNN + YS P ++ R + TWSLD
Sbjct: 130 STEIDRNNSSSKNDHLKYSRPALSRNSRSFTRSNNVLPTWSLD 172
>Z99277-6|CAB16484.1| 677|Caenorhabditis elegans Hypothetical
protein Y53C12A.1 protein.
Length = 677
Score = 26.6 bits (56), Expect = 8.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 89 SKLFISPCTGINIRPLTSYMLRFSCNVIQNPPPAQ 193
SK+++ TG+ +R + + F + +NPP AQ
Sbjct: 430 SKVYLESLTGVAVRQASQIVSPFDFSDDENPPNAQ 464
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,431,775
Number of Sequences: 27780
Number of extensions: 214626
Number of successful extensions: 670
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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