Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_G10
(705 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 29 0.49
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 28 1.1
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 27 2.6
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 26 6.0
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 6.0
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 25 8.0
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 25 8.0
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 8.0
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 29.5 bits (63), Expect = 0.49
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = -2
Query: 344 AAKRVVQEQKRKECITAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKLLHQGAINFSKQ 165
A +VVQE NDL ++L + LN AY+ +KK++ + +L N + +
Sbjct: 677 AVNKVVQEDILFAIDNVYNDLAESLHEQLN-----AYIQRKKINKKNQL------NGNDE 725
Query: 164 TQQWLTLVENFSSALKE---IGDVENW 93
TQ + + F KE + DV +W
Sbjct: 726 TQNLVLALNKFGCFAKEMVCLRDVNDW 752
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = -1
Query: 258 KCRCCSSLFKSEKVRCGSKTFTPRC--NKFFQTNTAMVDSCGKFQQCSQRNWGCRKLGTK 85
+C C ++ K + K F P C N +T T ++S G+FQ ++N+ + GTK
Sbjct: 255 RCHGCYTVVKDME-----KKFCPSCGGNTLIKT-TCSINSKGEFQVHLKKNFEWKTRGTK 308
Query: 84 Y 82
Y
Sbjct: 309 Y 309
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 27.1 bits (57), Expect = 2.6
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Frame = -2
Query: 248 VAQAYLNQKKLDAE--AKLLH-QGAINFSKQTQQWLTLVENFSSAL---KEIGDVENWAR 87
+A +L+ K + E L + +G + TQ W L+ENF S L +E ++ W+
Sbjct: 468 IAIKFLDDAKCETEDSTNLTNREGEAEKTLNTQPWKNLIENFISELQAEEEENNITEWSD 527
Query: 86 --SIEND 72
S+ ND
Sbjct: 528 IISVRND 534
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.8 bits (54), Expect = 6.0
Identities = 19/84 (22%), Positives = 41/84 (48%)
Frame = -2
Query: 260 LNVGVAQAYLNQKKLDAEAKLLHQGAINFSKQTQQWLTLVENFSSALKEIGDVENWARSI 81
L V + QKK AEA+ + + +++T WL + + +S+ K++ +N +++
Sbjct: 667 LKVNKPEMKEGQKK--AEARKKKESPLEATEETNPWLQVPDQRTSSAKKLD--KNSSKAD 722
Query: 80 ENDMKIITDTLERAYEKAQEKHKQ 9
+ + K+ D + E +E Q
Sbjct: 723 KKNHKLKMDKVASLQELVEEPKVQ 746
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = -1
Query: 279 TSIGRSFKCRCCSSLFKSEKVRCGSKTFTPRCNKFFQTNTAMVDSC 142
T + + RC LFK++ + K F C + N ++D C
Sbjct: 1201 TPVQQQLLRRCLEILFKTKDLSTVKKEFQNVCYQIMSGNVPVMDFC 1246
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = -2
Query: 257 NVGVAQAYLNQKKLDAEAKLLHQGAINFSKQTQQWLTLVENFSSALKEIGDVENWARSIE 78
N+ + + + DA++K L + + K Q + + N S +LKE+ +V+N +E
Sbjct: 168 NLSLKWIIYDPEDADADSKTLAKAWLQQIKMNQTSIDPMSNISKSLKEL-EVDNVESDLE 226
Query: 77 N 75
+
Sbjct: 227 D 227
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 25.4 bits (53), Expect = 8.0
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Frame = -2
Query: 317 KRKECITA-ANDLTQALVDHLNVGVAQAYLNQKKLDAEAKLLHQGAINFSKQTQQWLTLV 141
K++ I A AN + DH N A +NQ + KLL+ G+ +F + L
Sbjct: 831 KKQAIIDANANIYDKLTADHTNYETVSADINQNLKETLDKLLN-GSSDFKNNEIELLHDQ 889
Query: 140 ENFSSALKEIGDVENWARSIENDMKIITDTLERAYEKAQEK 18
++A E + + N K I DTL ++A EK
Sbjct: 890 IRITNAKLEKRE------KLINASKYIEDTLRSEIQEAAEK 924
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -2
Query: 242 QAYLNQKKLDAEAKLLHQGAINFSKQTQQWLTLVENFSSALKEIGDVEN 96
+ Y Q DA +H G FSK+ WL + + ++++ D +N
Sbjct: 444 ELYGKQFYYDAVGIAVHNGGFYFSKKKMGWLKPNQPYLLSIQDPVDFQN 492
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,625,070
Number of Sequences: 5004
Number of extensions: 48112
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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