Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_G09
         (686 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    27   0.14 
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    25   0.44 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   2.3  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   2.3  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   2.3  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    22   4.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   5.4  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   9.5  

>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = -2

Query: 169 YYCHPTYEVSVYTIWSGQPWNRMFGNLTLI 80
           Y+    Y++  Y  W  + W+    NL L+
Sbjct: 61  YFISNVYQILAYNFWKKKYWSEFLANLKLL 90


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
 Frame = -2

Query: 166 YCHPTYEVSVYTIWSGQPWNRMFGNLTLIVMXRTD--VCYTYSA 41
           YC   Y + V T +  + W R+  NL      +     CY Y A
Sbjct: 76  YCFNYYVIVVTTFYKRRTWTRLLKNLESCAKIKKTKRYCYYYYA 119


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 338 CSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGP 448
           C+  ++ T +SHC+C   +  G    +L+    + GP
Sbjct: 140 CTPNATNTVWSHCQCVLAD--GVERGILTANRMIPGP 174


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 338 CSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGP 448
           C+  ++ T +SHC+C   +  G    +L+    + GP
Sbjct: 140 CTPNATNTVWSHCQCVLAD--GVERGILTANRMIPGP 174


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 247 QTRRNPEWRMRTT 285
           QTRRNP +R RT+
Sbjct: 226 QTRRNPYYRPRTS 238


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +2

Query: 5   YYIIKSIAFLLXRTVGVTHISPXHHYEGEVSKHSIPWLSTPDSIH*NLICRMAVVVFLKV 184
           YYI  S+AF++  ++ + HI       G        +L +    +    C + +VV LK+
Sbjct: 6   YYITISMAFIIFVSLEIYHIYTVVEESG-FENFVKTYLVSDFENYVTFFCSLFIVVILKL 64


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 278 EQLLLEGGVPGIAD 319
           EQ+L EGG P + D
Sbjct: 837 EQILAEGGCPNLYD 850


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -3

Query: 498 PPIHRWYLLSLHSSLQCGPSRPHRSLRTLTLLPNSLVLVQRQWE*LVP 355
           P + R  L  L S L  G   P   +    + PN+++L       LVP
Sbjct: 129 PVVKRRLLQHLASCLNQGQKEPQVQVIVPEVAPNNIILGNGTGVQLVP 176


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,279
Number of Sequences: 336
Number of extensions: 3582
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)