BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_G08
(711 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014296-2230|AAF49855.1| 150|Drosophila melanogaster CG11258-P... 160 1e-39
>AE014296-2230|AAF49855.1| 150|Drosophila melanogaster CG11258-PA
protein.
Length = 150
Score = 160 bits (389), Expect = 1e-39
Identities = 72/131 (54%), Positives = 96/131 (73%)
Frame = -2
Query: 506 MVFLSVINWARCRGPDEFWRKRRVFRLAAHYIGRRRNCYSIAVRNVHRALVYATKARKLK 327
MVFL++ R RGPDEFWRKRR+F+LAAHY R RN YS A+R+VHRAL YATK RKLK
Sbjct: 1 MVFLNLPLLVRSRGPDEFWRKRRIFKLAAHYRSRTRNVYSFAIRSVHRALAYATKGRKLK 60
Query: 326 KEDMKSLWDVRITAACEQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAVA 147
K DM LW R+ A C+Q+ + L + +EGL R++I+L++K LSDLA WEP++FEAL ++
Sbjct: 61 KLDMAQLWSTRVEAGCQQYGVGLETFKEGLARSDILLNKKVLSDLAIWEPRSFEALVKIS 120
Query: 146 KYKLETDRFID 114
+ + + D
Sbjct: 121 RERAAVEGMPD 131
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,180,954
Number of Sequences: 53049
Number of extensions: 548147
Number of successful extensions: 977
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3149551053
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -