Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_G04
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0968 - 23027940-23028149,23028800-23029002,23029610-230301... 54 1e-07
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557... 48 9e-06
04_04_1259 + 32171412-32171805,32173341-32174193,32174263-32174581 44 1e-04
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875... 42 4e-04
04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019 31 0.63
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 31 0.83
04_04_1320 - 32623378-32623949,32624035-32624451,32624548-326248... 30 1.9
02_01_0289 - 1937125-1937385,1937570-1937611 29 3.3
06_01_1197 - 10298410-10298670,10298860-10298901 29 4.4
01_01_0497 - 3664349-3664687 29 4.4
06_02_0169 - 12535102-12536062,12536949-12537646 28 5.9
05_04_0284 - 19813179-19813340,19813464-19813748,19813850-198141... 28 5.9
03_05_0327 - 23154014-23154942,23155169-23155316,23155606-231566... 28 5.9
>07_03_0968 -
23027940-23028149,23028800-23029002,23029610-23030138,
23030342-23030579,23031121-23031168,23031199-23031494
Length = 507
Score = 53.6 bits (123), Expect = 1e-07
Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 4/158 (2%)
Frame = -1
Query: 506 MSPVHDQVYIHTLVVALSCVPTALWVGLTINIVGKKLMLVIMLISS--GLAALGLNLVRS 333
M P +Y LV +L+ P + L ++ +G+K+ L IML+ S LA L ++L +
Sbjct: 353 MQPKDANLYRDVLVTSLAEFPGLVLAALLVDRIGRKVSLGIMLLLSCAFLAPLAVHLGQG 412
Query: 332 SLENLILSCVFEAIVSCTEAVLFCVICEIFPTKXXXXXXXXXXMCGRVGAIVGNVVFGAL 153
S+ L L C I+ AVL+ EI+P GR+G+IV VV +L
Sbjct: 413 SVTTL-LFCARTCIMG-GFAVLYVYTPEIYPASSRNTGVGITSSFGRIGSIVSPVVTVSL 470
Query: 152 VDEHC--IVPIYMFGTLLITSGLLCIILPKSTRPERPQ 45
E+C ++ +L + + C ++P T+ + Q
Sbjct: 471 -SENCRQKEAVFFMDLMLFLAAVACALIPLETKGRQIQ 507
>03_05_0434 + 24252994-24253449,24254791-24254877,24255450-24255748,
24256146-24256383,24256907-24257441,24257527-24257729,
24258311-24258520
Length = 675
Score = 47.6 bits (108), Expect = 9e-06
Identities = 42/196 (21%), Positives = 84/196 (42%), Gaps = 1/196 (0%)
Frame = -1
Query: 644 TLMMWFPDLFERFSQFASLYGDEPAGVCEVSLAVANATTDIPIQSTMSPVHDQVYIHTLV 465
TL++WF F+ + + A + + + + + T++ Q ++ +Y T +
Sbjct: 482 TLLLWFAFFANSFAYYGLVL--LTAQLSDANRSCTSGQTNVVPQKDVN-----LYKDTFI 534
Query: 464 VALSCVPTALWVGLTINIVGKKLMLVIMLISSGLAALGLNLVRSSLENLILSCVFEAIVS 285
+L+ VP + + ++ G+K + ML + L L ++ L +L A+
Sbjct: 535 TSLAEVPGLILSAVLVDWFGRKASMWFMLFTCCAFIGPLVLQQNELLTTVLLFGARAVAM 594
Query: 284 CTEAVLFCVICEIFPTKXXXXXXXXXXMCGRVGAIVGNVV-FGALVDEHCIVPIYMFGTL 108
+ VL E++PT GR+G +V +V G L H + I +F +
Sbjct: 595 GSFTVLCLYAPEVYPTSARSTGVGIATAIGRIGGVVCPLVAVGMLRSCHQMEAILVFELV 654
Query: 107 LITSGLLCIILPKSTR 60
L +G+ C + P T+
Sbjct: 655 LFLAGVACFLFPIETK 670
>04_04_1259 + 32171412-32171805,32173341-32174193,32174263-32174581
Length = 521
Score = 43.6 bits (98), Expect = 1e-04
Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 4/144 (2%)
Frame = -1
Query: 485 VYIHTLVVALSCVPTALWVGLTINIVGKKLMLVIMLISSGLAALGLNLV--RSSLENLIL 312
+Y+ LV +L+ +P L L ++ G+K + + ++ SG++ +L+ ++ L
Sbjct: 361 LYVSVLVNSLAEMPAYLLTALLLDRFGRKPLAIGTMLLSGISCSAGSLIAGAGAMRVARL 420
Query: 311 SCVFEAI--VSCTEAVLFCVICEIFPTKXXXXXXXXXXMCGRVGAIVGNVVFGALVDEHC 138
+C I ++ T +LF E+FPT ++GAI+ +V ++ E
Sbjct: 421 ACGVVGIFGMAATYNLLFIYTAELFPTAVRNAALGCTSQASQMGAILAPLV--VVLGER- 477
Query: 137 IVPIYMFGTLLITSGLLCIILPKS 66
VP +FG + G L LP++
Sbjct: 478 -VPFALFGVSGLVGGFLVFCLPET 500
>04_04_1099 -
30886361-30886591,30886739-30886941,30887030-30887555,
30887751-30887988,30888592-30888695,30888784-30889059,
30889216-30889218
Length = 526
Score = 41.9 bits (94), Expect = 4e-04
Identities = 30/143 (20%), Positives = 61/143 (42%), Gaps = 1/143 (0%)
Frame = -1
Query: 485 VYIHTLVVALSCVPTALWVGLTINIVGKKLMLVIMLISSGLAALGLNLVRSSLENLILSC 306
+Y + + + + +P + + ++ +G+KL + ML +S + L R+ + +
Sbjct: 372 LYKNVFISSFAEIPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDILTRVSLF 431
Query: 305 VFEAIVSCTEAVLFCVICEIFPTKXXXXXXXXXXMCGRVGAIVGNVVFGALVDE-HCIVP 129
+S + +++ EI+PT GR+G I+ +V ALV
Sbjct: 432 GARLCISASFTIVYIYAPEIYPTSVRTTGIGVASSVGRIGGILCPLVAVALVHSCQQTTA 491
Query: 128 IYMFGTLLITSGLLCIILPKSTR 60
I +F ++ SGL P T+
Sbjct: 492 ILLFELVIFLSGLAVSFFPFETK 514
>04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019
Length = 508
Score = 31.5 bits (68), Expect = 0.63
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -1
Query: 266 FCVICEIFPTKXXXXXXXXXXMCGRVGAIVGNVVFGALVDE-HCIVPIYMFGTLLITSGL 90
F + EIFP + G++GAIVG VFG L E H + +++ + +
Sbjct: 408 FIIPAEIFPARLRSTCHGISGAVGKIGAIVG--VFGFLYTEYHIRIFLFVLIGCNLVGFI 465
Query: 89 LCIILPKS 66
++LP+S
Sbjct: 466 FTLLLPES 473
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 31.1 bits (67), Expect = 0.83
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 243 KDLADDAEEHGLRAAHDGLEHARQDQVLERRPHQVKSQGRQ 365
K L ++ + H L G E RQ + LER+ +++ QGR+
Sbjct: 76 KQLEEERQNHTLTVQRHGEELERQSRELERQREELERQGRE 116
>04_04_1320 -
32623378-32623949,32624035-32624451,32624548-32624895,
32625671-32625768,32625882-32626051,32627134-32627418,
32628041-32628119,32628481-32628623,32629227-32629634
Length = 839
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +1
Query: 244 KISQMTQKSTASVQLTMASNTHDRIRFSSDDRTRLSPKAASPELISIITNMSFLPTMLIV 423
++S TQ + ++ + + S DRT L P+L+S + N S P +L+V
Sbjct: 546 QLSAATQAAASADVTVLVVGADQSVERESLDRTSLLLPGQQPQLVSAVANASRGPVILVV 605
>02_01_0289 - 1937125-1937385,1937570-1937611
Length = 100
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 101 TSGLLCIILPKSTRPERPQ 45
TSG LC +LP S P RPQ
Sbjct: 37 TSGSLCAMLPDSCSPHRPQ 55
>06_01_1197 - 10298410-10298670,10298860-10298901
Length = 100
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 101 TSGLLCIILPKSTRPERPQ 45
TSG LC +LP S P RPQ
Sbjct: 37 TSGSLCAMLPDSCLPHRPQ 55
>01_01_0497 - 3664349-3664687
Length = 112
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/62 (33%), Positives = 26/62 (41%)
Frame = -3
Query: 537 CHDRHTNPEHDVAGARPGVHPHAGGGAELRPHRALGRPHNQHRRQETHVSDYADKFRAGG 358
C PEH AGA GV GGGA +R R + V+ +A +FR G
Sbjct: 33 CSPESLRPEHQPAGAGDGV-TMGGGGASASSYRR-NRRRMEGGLAAAAVAFHARRFRPHG 90
Query: 357 LG 352
G
Sbjct: 91 GG 92
>06_02_0169 - 12535102-12536062,12536949-12537646
Length = 552
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = -1
Query: 191 VGAIVGNVVFGALVD 147
+GA++GNVVFGAL D
Sbjct: 76 LGAVIGNVVFGALGD 90
>05_04_0284 -
19813179-19813340,19813464-19813748,19813850-19814131,
19814224-19814531,19814654-19814927,19815807-19816175,
19816372-19816434,19817495-19817789,19817818-19818008,
19818123-19818428,19818516-19818638
Length = 885
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 498 GARPGVHPHAGGGAELRPHRALGRPHNQHRRQETHVS 388
GA P A AEL H+ RPH RR + +S
Sbjct: 15 GALPQEGHFAPAAAELSLHKLQSRPHKARRRSSSSIS 51
>03_05_0327 -
23154014-23154942,23155169-23155316,23155606-23156622,
23156753-23157217,23160258-23161247
Length = 1182
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = -1
Query: 407 GKKLMLVIMLISSGLAALGLNLVRSSL 327
G+KL+ +++ +S GLA GL L+R+ +
Sbjct: 216 GRKLLSLVLGVSEGLAREGLELIRAQV 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,446,376
Number of Sequences: 37544
Number of extensions: 342302
Number of successful extensions: 1562
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1559
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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