Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_G04
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                29   0.040
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.86 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.1  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 29.1 bits (62), Expect = 0.040
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -3

Query: 537 CHDRHTNPEHDVAG-ARPGVHPHAGGGAELRPHRALGRPHNQH 412
           CH     P    AG   P  HPH    ++  PHR    PH+QH
Sbjct: 299 CHSPGVYPS--TAGFLPPSYHPHQHHPSQYHPHRG-SSPHHQH 338


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -1

Query: 515 QSTMSPVHDQVYIHTLVVALSCVPTALWVGLTINIVGKKLMLVIMLISSGLA 360
           Q+T SPV  +V IHT  V    +    W     ++  K + L   + SSG+A
Sbjct: 357 QTTNSPVDMRVGIHTGAVLAGVLGQRQW---QFDVYSKDVELANKMESSGMA 405


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -1

Query: 581 DEPAGVCEVSLAVANATTDIPIQSTMSPVHDQVYIHTLVVALSCV 447
           D    VC+++L +  A TD+  +ST   +  +V +H+  V    V
Sbjct: 487 DHADRVCDMALDMVEAITDLKDRSTGLHLQIRVGVHSGAVVAGIV 531


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 76  KMMHSSPLVMRRVPNM*MGTMQCSSTSAPNTTLPTMAPTL 195
           + M S PL+ R +      T   S   APN TLP++  TL
Sbjct: 646 RKMPSMPLLPRPIS---CHTTPDSFIEAPNKTLPSLPSTL 682


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 12/41 (29%), Positives = 16/41 (39%)
 Frame = +3

Query: 273 GLRAAHDGLEHARQDQVLERRPHQVKSQGRQPGTYQHNH*H 395
           G+   H G   ++QD    R P   +   R    YQH   H
Sbjct: 60  GVPGHHYGAAGSQQDMPYPRFPPYNRMDMRNATYYQHQQDH 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,320
Number of Sequences: 438
Number of extensions: 3336
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)