Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_G02
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    30   0.31 
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    26   3.8  
SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    25   8.9  

>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = -2

Query: 330 HIIHLFVIFEFTLKCKFN*FPLLHNITTVYRKLVMYCNCFNLNFVFLENGLIRLMMVS 157
           H++H F +F+ T+  ++N  PLL  +T  +   +   N F     F++ G IR   +S
Sbjct: 242 HVLHAFTLFDTTV--EYNIEPLLW-LTCAFLSYMAQGNAFRSLVCFIQRGGIREFFIS 296


>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 524 NLQIIRYVDSRQSFLSISVSDFPMF 598
           N++   YV S+QSF+S+  +D P+F
Sbjct: 463 NVKGFPYVPSQQSFVSLHFNDRPVF 487


>SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 344 LLDKFLLDKYGYIKD*IQYCGCL 412
           LLDKF+L+ YG   D  +YCG L
Sbjct: 202 LLDKFVLNGYGDKCD-PEYCGSL 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,367,331
Number of Sequences: 5004
Number of extensions: 46491
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)