Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_G02
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.6  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   9.8  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   9.8  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 595 HWKIRYRYAKERLS*INVANYL 530
           H  +++RY   RL   N+A YL
Sbjct: 63  HMMLQFRYLDARLKFSNIAPYL 84


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 125 ICNHFKKTTRNETIISLMRPFSKNT 199
           +CNH K +T    I S +  F + T
Sbjct: 153 LCNHIKYSTNKGNIRSAITIFPQRT 177


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 497 KHFSDLPTMTQKFRIIRVMFNFNSDPIKSNIHSIE 393
           KH  D+ + TQK +    +F+ +   I S +H+++
Sbjct: 235 KHMLDVVSGTQKKKRKIYLFSGHESNIASVLHALQ 269


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 497 KHFSDLPTMTQKFRIIRVMFNFNSDPIKSNIHSIE 393
           KH  D+ + TQK +    +F+ +   I S +H+++
Sbjct: 250 KHMLDVVSGTQKKKRKIYLFSGHESNIASVLHALQ 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,261
Number of Sequences: 438
Number of extensions: 3043
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)