Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_F24
         (334 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0939 + 26131405-26131596,26132753-26133166                       29   0.69 
04_03_0825 - 20092781-20092801,20092844-20093079,20093166-200932...    28   1.6  
02_03_0205 - 16411707-16412759,16413077-16413256,16413960-164144...    27   4.9  
06_03_0564 + 22218955-22219060,22219184-22219293,22222363-22223682     26   8.5  

>06_03_0939 + 26131405-26131596,26132753-26133166
          Length = 201

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 47  IAFWLSISERSKCMGPSRCRQNSQEVSRRNMQSTQQVKYMQR 172
           +A+W ++SER  C   + C    QEV+  + QS  +++   R
Sbjct: 61  VAWWKAVSERGDCTYGTTCLFVPQEVTGGSPQSISRIRVAAR 102


>04_03_0825 -
           20092781-20092801,20092844-20093079,20093166-20093244,
           20093344-20093482,20093533-20093624,20093714-20093830,
           20093930-20094041,20094154-20094260,20094351-20094427,
           20094517-20094598,20094702-20094839,20095495-20095608
          Length = 437

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 117 WLFCLHLLGPIHLLRSLIDNQKAILNAIEFRLCDTLT 7
           WL C+HL  P   L  L+D+  A L AI     D +T
Sbjct: 26  WLTCVHLFMPEMPLMILVDDAGAFLPAINHSPWDGVT 62


>02_03_0205 -
           16411707-16412759,16413077-16413256,16413960-16414498,
           16414798-16414825
          Length = 599

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = +3

Query: 18  HIIEIQSHSK*PFGCQSANEVSVWGRVGVGR 110
           H+I++ S +     C++ + +S+WG +G+G+
Sbjct: 30  HLIQLVSQN-----CENHHIISIWGMIGIGK 55


>06_03_0564 + 22218955-22219060,22219184-22219293,22222363-22223682
          Length = 511

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 195 SCLHRPSCRCIYFTCCVLCIFRLL 124
           S  H    +C+++ CCVL +  +L
Sbjct: 164 SGFHHAISKCLFYLCCVLPVLTIL 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,556,279
Number of Sequences: 37544
Number of extensions: 110666
Number of successful extensions: 322
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)