Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_F24
(334 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 23 0.97
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 23 0.97
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 23 0.97
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 1.7
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 22 1.7
U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive o... 21 3.0
AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 21 3.0
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 21 3.9
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 20 6.8
DQ244074-1|ABB36784.1| 517|Apis mellifera cytochrome P450 monoo... 20 9.1
AF080430-1|AAC28863.2| 208|Apis mellifera ribosomal protein S8 ... 20 9.1
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 23.0 bits (47), Expect = 0.97
Identities = 16/59 (27%), Positives = 23/59 (38%)
Frame = -2
Query: 177 SCRCIYFTCCVLCIFRLLTSWLFCLHLLGPIHLLRSLIDNQKAILNAIEFRLCDTLTNI 1
SC+CIY LC+ L +L L L+ S N + EF + N+
Sbjct: 182 SCKCIYVQSINLCMAGRLFGYLCPGMALSQFDLMGSPYRNLTFVRREGEFSVLQVSFNL 240
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 23.0 bits (47), Expect = 0.97
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 165 IYFTCCVLCIFRLLTSWL 112
IY CC+L I ++ WL
Sbjct: 248 IYIPCCMLVIVSWVSFWL 265
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 23.0 bits (47), Expect = 0.97
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 165 IYFTCCVLCIFRLLTSWL 112
IY CC+L I ++ WL
Sbjct: 248 IYIPCCMLVIVSWVSFWL 265
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 22.2 bits (45), Expect = 1.7
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = -2
Query: 147 VLCIFRLLTSWLFCLHLLGPIHLLRSLIDNQKAILNAIE 31
++C+ L+ W CL L P +L+ N +N ++
Sbjct: 282 LICMMLLIGHWSGCLQFLVP--MLQGFPSNSWVAINELQ 318
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 22.2 bits (45), Expect = 1.7
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = -2
Query: 147 VLCIFRLLTSWLFCLHLLGPIHLLRSLIDNQKAILNAIE 31
++C+ L+ W CL L P +L+ N +N ++
Sbjct: 250 LICMMLLIGHWSGCLQFLVP--MLQGFPSNSWVAINELQ 286
>U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive
opsin protein.
Length = 377
Score = 21.4 bits (43), Expect = 3.0
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +2
Query: 158 KYMQRQLGRCRQLGTHTPK 214
+Y Q RC+ +G H P+
Sbjct: 342 RYRQELQKRCKWMGIHEPE 360
>AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin
protein.
Length = 377
Score = 21.4 bits (43), Expect = 3.0
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +2
Query: 158 KYMQRQLGRCRQLGTHTPK 214
+Y Q RC+ +G H P+
Sbjct: 342 RYRQELQKRCKWMGIHEPE 360
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 21.0 bits (42), Expect = 3.9
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = -2
Query: 246 RCYSCVCCRKAF 211
+ Y C+ C+KAF
Sbjct: 60 KTYQCLLCQKAF 71
Score = 20.2 bits (40), Expect = 6.8
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = -2
Query: 279 HFNQHVQISAVRCYSCVCCRKAFGV*VPSCLHR 181
H+ H + + Y C C K+F V +HR
Sbjct: 110 HYRTH---TGEKPYQCEYCSKSFSVKENLSVHR 139
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 20.2 bits (40), Expect = 6.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +3
Query: 177 WGGVGNWVLIHQRLCGSKRKNSS 245
WGG+G VL L G+ SS
Sbjct: 563 WGGIGVVVLFAVVLAGATCLGSS 585
>DQ244074-1|ABB36784.1| 517|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 517
Score = 19.8 bits (39), Expect = 9.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 1 YISKCIT*SKFNRIQNSLLVVNQR 72
+I CI K N+I ++ +NQR
Sbjct: 66 WIFSCIGYYKLNKIHDAYKDLNQR 89
>AF080430-1|AAC28863.2| 208|Apis mellifera ribosomal protein S8
protein.
Length = 208
Score = 19.8 bits (39), Expect = 9.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 210 QRLCGSKRKNSSEQQKFE 263
+R G KRK +++KFE
Sbjct: 11 RRATGGKRKPIRKKRKFE 28
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,536
Number of Sequences: 438
Number of extensions: 1160
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used: 7466580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
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