Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_F23
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    31   0.11 
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    29   0.59 
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    27   1.4  
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   1.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   1.8  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   3.2  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    26   4.2  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   7.3  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   7.3  

>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -2

Query: 541 YYPQQPENPIFSPTQATELADP 476
           YYPQQP  P+F  ++ TEL DP
Sbjct: 522 YYPQQPL-PLFDSSEMTELVDP 542


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 18/59 (30%), Positives = 23/59 (38%)
 Frame = -3

Query: 288 SHHPECPHPRSSQCSSDGEVGPQVVPEARPQLPTHTAQVEEASPQATPPPTVDPDRMKN 112
           SHHP   +P    C       P + P   PQ+P+H   V   SP     P   P  + N
Sbjct: 136 SHHPPLHNPLPVSCQ------PVLRPPPVPQVPSHWYPVSLPSPNLPHQPISKPPVIPN 188


>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
 Frame = -3

Query: 240 DGEVGPQVVPEARPQLPTHTAQ------VEEASPQATPPPTVDPDRMKNXKP 103
           DG  G    P+ + Q  T +AQ      VE+ +PQ T P  VD  +     P
Sbjct: 366 DGIPGKAASPQVQQQQQTSSAQQQQPQRVEQPAPQTTQPTQVDTQQAAKPAP 417


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +2

Query: 173 TCAVCVGNCGRASGTTCGPTSPSEEHWE 256
           TCA+C+  C +     C   S  E  +E
Sbjct: 83  TCAICIRQCHKCESNVCSMCSKQERTFE 110


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = -3

Query: 231 VGPQVVPEARPQLPTHTAQVEEASPQAT---PPPTVDPDRMKNXKP 103
           + P +   ++P LP  +++V  A+  A    PPP   P R    KP
Sbjct: 280 MNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKP 325


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 407 SGRRFGSLGNRYQSGGVQFDLFSGVSQFGR 496
           +G  FG+  N   +GG  F + SG   FG+
Sbjct: 64  NGGLFGNRNNTTTTGGTGFGMSSGTGMFGQ 93


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 196 LRSGLRDHLRPYLPIRRTLGRTRMWALWVVRS 291
           LR+  +  L  +LP RRT G  ++WA + V +
Sbjct: 838 LRNFKQGSLVLFLPTRRTAGNKKVWAAFNVNA 869


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 17/69 (24%), Positives = 26/69 (37%)
 Frame = +2

Query: 26  SFLQKNXHHHLFSPKQLIVSIXI*VSGXQFFIRSGSTVGGGVACGDASSTCAVCVGNCGR 205
           +F   N     F P + +V+    + G  F+  S ST          + TC       G+
Sbjct: 344 NFTVGNYPEGYFLPVRFVVANGAYIGGFDFYFTSDSTGPLATTSYSYTKTCTQQFLPFGQ 403

Query: 206 ASGTTCGPT 232
            +G   GPT
Sbjct: 404 GNGGVNGPT 412


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 17/69 (24%), Positives = 26/69 (37%)
 Frame = +2

Query: 26  SFLQKNXHHHLFSPKQLIVSIXI*VSGXQFFIRSGSTVGGGVACGDASSTCAVCVGNCGR 205
           +F   N     F P + +V+    + G  F+  S ST          + TC       G+
Sbjct: 344 NFTVGNYPEGYFLPVRFVVANGAYIGGFDFYFTSDSTGPLATTSYSYTKTCTQQFLPFGQ 403

Query: 206 ASGTTCGPT 232
            +G   GPT
Sbjct: 404 GNGGVNGPT 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,709,706
Number of Sequences: 5004
Number of extensions: 28667
Number of successful extensions: 100
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)