Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_F20
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    48   9e-07
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    31   0.11 
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    31   0.19 
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    29   0.59 
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   4.1  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    26   5.5  
SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po...    25   9.5  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    25   9.5  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 48.4 bits (110), Expect = 9e-07
 Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
 Frame = -2

Query: 410 SMSLMTLVNLFMQSH-FLYQAHLYLGLMLMCGFVLFDTQLIIEKRRMGSKDFVQHALELF 234
           S+ L  L+  F+ S  F+  A    G ++ CG++LFDT  I+   R   ++F+  +L L+
Sbjct: 186 SLILTPLIFFFVPSTPFIDMAFAGFGTLVFCGYILFDTYNIL--HRYSPEEFIMSSLMLY 243

Query: 233 IDFIGMFRRLVIIL 192
           +DFI +F R++ IL
Sbjct: 244 LDFINLFIRILQIL 257


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 31  LPIFLALPQIF-QSANQKKQISSNIPLTILXWVNNTF 138
           +P +  +P +F QS    +Q +SN+ +T+  WV N F
Sbjct: 166 IPFYKLIPTLFAQSDKNIRQEASNLSITLYAWVGNAF 202


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
 Frame = +1

Query: 376 INRLTKVISDIDVN--SVINVPPRNSQLPRSASIAAAEKHTNTRXSAEQSSYYDRWVNYT 549
           ++ +T + S++DV+  S IN   +N  +P S+  +   K + +  + E  S +  W++YT
Sbjct: 279 LSPMTPLSSELDVSAFSEINSKIKNVDVPASSYSSPISKVSPSDVTEEDGSLFFFWMDYT 338

Query: 550 DIF 558
           +++
Sbjct: 339 EMY 341


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -2

Query: 407 MSLMTLVNLFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRRMGSKDFVQHAL 243
           +++ +  N  ++  FL+ A +   L+L+  F +    L +E RR  +KD V+  L
Sbjct: 328 LAIFSYCNFGIKQFFLFAAVMIYDLLLLFSFFVAILTLKLEMRRYNAKDDVRKVL 382


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
            Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 491  QIPGXVPSRAVIMIDGSTTLTYSSRGPMLMPDVN--PNPS 604
            Q+P   P    I+ +   +++YS+ GP ++ DVN   NPS
Sbjct: 1201 QVPATWPKEGDIVFN-HVSVSYSAAGPTILKDVNLHINPS 1239


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 312 YKTAHEHEAKIKMSLVQE 365
           Y TAH +E K K+ L+QE
Sbjct: 291 YPTAHPYEIKTKLYLIQE 308


>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 44  LHCLKSFNQQIKKNKSLQTSLSPSXCGSI 130
           +H  K+F   + K K+ Q   + S CGS+
Sbjct: 119 IHVFKAFYPLLTKKKTRQVIFTSSECGSM 147


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = +2

Query: 23  LYIYQFFLHCLKSFNQQIKKNKSLQTSLSPSXCGSIIPSKYIFSHAC 163
           +++ +F+ H +    +   K + LQ+S     C  I+P+     H C
Sbjct: 110 IFLQRFYAHAILFVMELFNKEQYLQSSKLLIFCLRILPADLPNDHQC 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,558,126
Number of Sequences: 5004
Number of extensions: 49462
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)