Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_F18
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...   101   9e-23
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    45   6e-06
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    31   0.14 
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    29   0.32 
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    27   2.3  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    27   2.3  
SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces...    27   2.3  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   7.0  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    25   9.2  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   9.2  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   9.2  
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.2  

>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score =  101 bits (241), Expect = 9e-23
 Identities = 49/98 (50%), Positives = 70/98 (71%), Gaps = 3/98 (3%)
 Frame = -1

Query: 515 DQATGVEIVKKALRMPCMTIAKNAGIDGSVVVAKVEDL-GDEF--GYDALNNEYVNMIEK 345
           DQ  GVEIV+KA+  P  TI +NAG++G+++V K+++L G EF  GYD   + +V++ E 
Sbjct: 467 DQKLGVEIVRKAITRPAQTILENAGLEGNLIVGKLKELYGKEFNIGYDIAKDRFVDLNEI 526

Query: 344 GIIDPTKVVRTALTDASGVASLLTTAEAVICEIPQEKE 231
           G++DP KVVRT L DASGVASL+ T E  I + P+E +
Sbjct: 527 GVLDPLKVVRTGLVDASGVASLMGTTECAIVDAPEESK 564


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 45.2 bits (102), Expect = 6e-06
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
 Frame = -1

Query: 512 QATGVEIVKKALRMPCMTIAKNAGIDGSVVVAKVE----DLGDEFGYDALNNEYVNMIEK 345
           +A  V    KAL      +A NAG D S +VA+++    D  D  G D    E  +M  K
Sbjct: 428 KAVAVSAFAKALSQLPTILADNAGFDSSELVAQLKAAHYDGNDTMGLDMDEGEIADMRAK 487

Query: 344 GIIDPTKVVRTALTDASGVASLLTTAEAVICEIPQEKE 231
           GI++  K+ +  ++  S  A LL   + ++   P+ +E
Sbjct: 488 GILEALKLKQAVVSSGSEGAQLLLRVDTILKAAPRPRE 525


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +1

Query: 259 TASAVVS--SDATPLASVRAVRTTFVGSMMPFSIMF-TYSLLRASYPNSSPRSSTLATT 426
           T+S++ S  S +TPL S  +       S    S  + T SLL +S P+S+P SS  +TT
Sbjct: 241 TSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTT 299


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = +1

Query: 271 VVSSDATPLASVRAVRTTFVGSMMPFSIMFTYSLLRASYPNSSPRSSTLATTTEPSMPAF 450
           ++SS    LA V +  +TF+  ++P S+ + +S   AS  NSSP    ++      +  +
Sbjct: 343 LLSSLEMVLAFVGSTGSTFISFILPGSLYYFFSHKVASPGNSSPLQLRISRAFAAGLAIY 402

Query: 451 FAIVM 465
             +VM
Sbjct: 403 GTVVM 407


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 251 HRSQLQQL*AVMQHHWHRSGLSAPPLWGQ 337
           H + L Q+ AV +HH    G+S P  +GQ
Sbjct: 579 HDTPLSQIQAVTRHHSEYYGMSDPRKYGQ 607


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 137 KCIQDVHFMKITSCLPYHP 193
           KC+ D  + +I +C+PY P
Sbjct: 449 KCVADSGYQRIKACIPYVP 467


>SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 370 LLRASYPNSSPRSSTLATTTEPSMPAFFAIVMHGI-LRAFFTISTP 504
           + +A Y  S  RS  LA          FA+V HG+ +R F  I  P
Sbjct: 134 IYKADYKTSIQRSRVLAEFFAKVPEKVFAVVTHGVDIRLFQKIQKP 179


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 20/82 (24%), Positives = 34/82 (41%)
 Frame = +1

Query: 226 LGSFSCGISQITASAVVSSDATPLASVRAVRTTFVGSMMPFSIMFTYSLLRASYPNSSPR 405
           L  FS GI QI+   +   +   + S    R  F G+  P    F+Y L    +     +
Sbjct: 168 LSFFSTGI-QISVQGI---NVNCIVSSEDGRIFFSGNKDPNLYEFSYQLEEGWFSRRCSK 223

Query: 406 SSTLATTTEPSMPAFFAIVMHG 471
            +   +  +  +P+FF+   HG
Sbjct: 224 INITGSVFDNFIPSFFSFGTHG 245


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 316 RTTFVGSMMPFSIMFTYSLLRA 381
           RTT VG+++ F +MF    L A
Sbjct: 481 RTTLVGTILSFGVMFYVDRLNA 502


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 379 ASYPNSSPRSSTLATTTEPS 438
           +S  +SSP SS+  TTT PS
Sbjct: 137 SSSSSSSPSSSSTTTTTSPS 156


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 158 FMKITSCLPYHPFHPYLPCH 217
           F+ +   +PY  F PYLP H
Sbjct: 861 FLSLFFDVPYDSFIPYLPTH 880


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 157 VDILNAFMNTNCYKCTWVFTIL 92
           VD+ N ++ T    CT +FT+L
Sbjct: 161 VDLANEYVQTGTLLCTGLFTLL 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,039,808
Number of Sequences: 5004
Number of extensions: 40017
Number of successful extensions: 147
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)