Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_F18
         (527 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   1.5  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   2.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   4.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   4.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   5.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   5.9  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 392 FGYDALNNEYVNMIEKGIIDPT 327
           FG D LNN ++ M E  +IDP+
Sbjct: 88  FGTDKLNNPFIGMGE-FLIDPS 108


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 140 CIQDVHFMKITSCLPYHPFHPYLP 211
           CIQ V    +   L YH FH Y+P
Sbjct: 202 CIQIV--FNLRRRLGYHLFHTYIP 223


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 237 KRA*PYGWHGRYGWNGWYGRHD 172
           KR  P  W G +G + W  R +
Sbjct: 157 KRVPPTNWVGVFGGSAWSWREE 178


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 237 KRA*PYGWHGRYGWNGWYGRHD 172
           KR  P  W G +G + W  R +
Sbjct: 157 KRVPPTNWVGVFGGSAWSWREE 178


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/43 (23%), Positives = 17/43 (39%)
 Frame = +3

Query: 393 FISKILHLSNNNRTINACIFCYCHAWHPQSFLYNLYTSGLITV 521
           ++ + L       T+   I      W P ++ YN   S L T+
Sbjct: 61  WVDRRLAFQGGKETLALSISMLARIWKPDTYFYNGKHSYLHTI 103


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -3

Query: 213 HGRYGWNGWYGRHDV 169
           HG  G   W G HDV
Sbjct: 112 HGVIGAGHWIGDHDV 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,033
Number of Sequences: 438
Number of extensions: 2789
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)