Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_F17
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    69   8e-13
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   7.0  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 68.5 bits (160), Expect = 8e-13
 Identities = 34/61 (55%), Positives = 41/61 (67%)
 Frame = -2

Query: 636 YAHFKQATVGDADPANRPGLXDLKGKAKFDAWHKLAGTSKEDAQKAYIEIVEGLIASIGL 457
           YA FKQATVGD +   +PGL DLKGK K++AW +L G SKEDA   YI  V+ L    G+
Sbjct: 28  YALFKQATVGDNN-TEKPGLLDLKGKFKWNAWEELKGKSKEDAASEYISFVDELKTKYGM 86

Query: 456 K 454
           K
Sbjct: 87  K 87


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 324 HFCLKCFFFKNTNSY 280
           H+CLKCF  K   SY
Sbjct: 400 HYCLKCFQVKPPRSY 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,787
Number of Sequences: 5004
Number of extensions: 42822
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)