Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_F16
         (669 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4YM52 Cluster: Putative uncharacterized protein; n=1; ...    39   0.13 
UniRef50_Q38CX6 Cluster: Putative uncharacterized protein; n=1; ...    29   8.8  

>UniRef50_Q4YM52 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 108

 Score = 38.7 bits (86), Expect = 0.13
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
 Frame = -2

Query: 602 IFTFSLAFSKAIVLFCLI*RISLFFIYI*STLFNFQ*TFHDRCHITIF---RFYVKAYIY 432
           IF +SL+FS  + LF  +  +S+FFIY+    +N + + +   H  I+     Y+  YI+
Sbjct: 31  IFHYSLSFSLPLDLFPSLYPLSIFFIYV----YNMEKSLYILAHTHIYGKEHMYIHTYIH 86

Query: 431 LYIH 420
            YIH
Sbjct: 87  TYIH 90


>UniRef50_Q38CX6 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 100

 Score = 29.1 bits (62), Expect(2) = 8.8
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -2

Query: 614 CIF---FIFTFSLAFSKAIVLFCLI*RISLFFIYI 519
           C+F   FIF F+LAF   ++LFCL   I +  +YI
Sbjct: 33  CLFICRFIFIFALAF---VILFCLFAFILILLLYI 64



 Score = 22.6 bits (46), Expect(2) = 8.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 470 ITIFRFYVKAYIYLYIHM 417
           I I   Y+  YIY+YI++
Sbjct: 57  ILILLLYIYLYIYIYIYI 74


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 503,019,433
Number of Sequences: 1657284
Number of extensions: 8073003
Number of successful extensions: 15186
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15071
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51239674196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)