Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_F14
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    27   1.7  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    25   7.0  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    25   7.0  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   9.3  

>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -3

Query: 624 SSAPAPTVNSKINIDANELSSELQN 550
           SS  + +VNSKIN+ +++ SS +QN
Sbjct: 268 SSTLSKSVNSKINLKSHQSSSSVQN 292


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 630 RESSAPAPTVNSKINIDANELSSELQNL 547
           R+ +   P   S  ++D + +SSELQN+
Sbjct: 153 RKKAGSQPVEESNTSLDMSTISSELQNI 180


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 265 ELSADNEMFTCSRKKLYIKILHKYTDLHYIEMKRL 369
           ELS+  E  T S +K+Y   L + ++ HY E++ +
Sbjct: 668 ELSSHEENLTISSEKIYRSFLSRISE-HYNELRNV 701


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 332 LCNIFM*SFFLEHVNISLSADSSLLEIDPSQ 240
           L NI   SF L HV++ L +  +L  ++P+Q
Sbjct: 396 LNNITATSFLLMHVSLFLGSPMNLQPVEPTQ 426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,620,474
Number of Sequences: 5004
Number of extensions: 55125
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)