Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_F12
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49910-1|CAA90118.1|  160|Caenorhabditis elegans Hypothetical pr...    44   4e-05
AF304128-1|AAG50241.1|  160|Caenorhabditis elegans NADH ubiquino...    44   4e-05
AL023856-6|CAC15864.1|  332|Caenorhabditis elegans Hypothetical ...    28   2.7  
Z92834-9|CAB07386.2|  192|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z78417-4|CAB01685.2|  531|Caenorhabditis elegans Hypothetical pr...    27   4.8  
U41105-7|AAA82402.2|  184|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z99277-6|CAB16484.1|  677|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z82093-2|CAB05019.1|  213|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>Z49910-1|CAA90118.1|  160|Caenorhabditis elegans Hypothetical
           protein F44G4.2 protein.
          Length = 160

 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -2

Query: 182 LGGLCWWWILYHIATEPEHITGEW--PYIDPSTWTDEELGIPPDAA 51
           +  + W W  YH+     H+ G W  PY+  S +TDEELGIP D+A
Sbjct: 100 ISAVIWAWFSYHMYYHSGHLLGHWYMPYL--SEFTDEELGIPKDSA 143


>AF304128-1|AAG50241.1|  160|Caenorhabditis elegans NADH ubiquinone
           oxidoreductaseAGGG subunit protein.
          Length = 160

 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -2

Query: 182 LGGLCWWWILYHIATEPEHITGEW--PYIDPSTWTDEELGIPPDAA 51
           +  + W W  YH+     H+ G W  PY+  S +TDEELGIP D+A
Sbjct: 100 ISAVIWAWFSYHMYYHSGHLLGHWYMPYL--SEFTDEELGIPKDSA 143


>AL023856-6|CAC15864.1|  332|Caenorhabditis elegans Hypothetical
           protein Y94A7B.9 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 372 FLDKFCRGKTL-SQNLHLKIIGRPNSF 449
           FL+ FCRGK + S+N+H+ I  R + F
Sbjct: 306 FLEIFCRGKRVTSKNVHMMIPSRLSQF 332


>Z92834-9|CAB07386.2|  192|Caenorhabditis elegans Hypothetical
           protein F39B2.5 protein.
          Length = 192

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +3

Query: 87  PCTGINIRPLTSYMLRFSCNVIQNPPPAQSTKPL 188
           P T   + P   Y+ RF+    Q  PP   T PL
Sbjct: 125 PLTKRELLPSLQYLCRFTLKTSQQKPPTPKTAPL 158


>Z78417-4|CAB01685.2|  531|Caenorhabditis elegans Hypothetical
           protein C35C5.5 protein.
          Length = 531

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +2

Query: 80  HQSMYWDQYKATHQLYAQVQLQCDTESTTSTI-HQALELTESIFWKALVAVHGTSKLHVL 256
           H+S  WD   AT   YAQ+   C  +     I ++ +   ++IF+   + +      +V 
Sbjct: 218 HESAEWDLLSATSSRYAQIYPGCCGQQYYIDIKYRIIIRRKAIFFTVTLTIPCMLIANVT 277

Query: 257 HFVWFVSSSQRRQRFA 304
            FV+ +  ++ +  ++
Sbjct: 278 PFVFLILPNEHKMTYS 293


>U41105-7|AAA82402.2|  184|Caenorhabditis elegans Hypothetical
           protein T02G5.11 protein.
          Length = 184

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 126 MLRFSCNVIQNPPPAQ 173
           MLR  C+  QNPPPA+
Sbjct: 1   MLRDDCDTTQNPPPAE 16


>Z99277-6|CAB16484.1|  677|Caenorhabditis elegans Hypothetical
           protein Y53C12A.1 protein.
          Length = 677

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 69  SKLFISPCTGINIRPLTSYMLRFSCNVIQNPPPAQ 173
           SK+++   TG+ +R  +  +  F  +  +NPP AQ
Sbjct: 430 SKVYLESLTGVAVRQASQIVSPFDFSDDENPPNAQ 464


>Z82093-2|CAB05019.1|  213|Caenorhabditis elegans Hypothetical
           protein ZK39.3 protein.
          Length = 213

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 285 WLLETNQTKCRTWSLDVPCTATNAFQKIDSVSS 187
           W+       C T S+   CTATN+F   D  +S
Sbjct: 107 WIGARRTDACMTKSITSDCTATNSFTWTDGSTS 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,937,279
Number of Sequences: 27780
Number of extensions: 233434
Number of successful extensions: 656
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)