Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_F09
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0537 - 10398310-10398313,10399946-10400232                       29   3.9  
04_03_0992 + 21502060-21502065,21502688-21502863,21506178-215062...    29   3.9  
02_01_0740 - 5511434-5511547,5511952-5512023,5512106-5512300,551...    29   5.2  
02_01_0397 - 2877242-2878479,2878557-2878861,2879862-2880549,288...    28   9.1  

>09_02_0537 - 10398310-10398313,10399946-10400232
          Length = 96

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 511 CVFRVGSDSTKGTEHFKRCSAV 576
           CV ++ +D  +G+EH KRC A+
Sbjct: 28  CVKQIKADLIRGSEHSKRCKAI 49


>04_03_0992 +
           21502060-21502065,21502688-21502863,21506178-21506259,
           21506394-21506495
          Length = 121

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 745 HNHVVASNDSNIGNMHLTEKFIFDNGYLFM 656
           H +  ASN  N+G     + F  DNG+LF+
Sbjct: 14  HGYTPASNPRNLGTSAGLQSFAPDNGFLFL 43


>02_01_0740 -
           5511434-5511547,5511952-5512023,5512106-5512300,
           5512408-5512611,5512690-5512848,5513144-5513249,
           5513387-5513554,5513644-5513834,5514410-5514634,
           5514818-5514935,5515023-5515195,5515280-5515327,
           5515484-5515589,5515697-5515802,5516211-5516332,
           5516661-5516741,5516844-5516934,5517036-5517132,
           5517287-5517919
          Length = 1002

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 17  QLPSTSNXQNKCIHVILSLSKNSNKMPHFASSGHTKVINPKLKS 148
           +LP+ SN Q   +HV    S    +MP F +   + +++PK KS
Sbjct: 270 ELPTRSNVQEDGVHVPYVESNLLAQMPSFTAKIQSFLLHPKHKS 313


>02_01_0397 -
           2877242-2878479,2878557-2878861,2879862-2880549,
           2881998-2882016
          Length = 749

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -2

Query: 445 NIGPVLIK*LECFKFYTRVGLCH*SQHTKRAITSSP*LKTILVLNLHVKLTYFF 284
           ++GP+L + + CF  + RV        +   I  +P LKT++V  L    +Y F
Sbjct: 362 DLGPILAQDVTCFNVWHRVAATGSFSSSPTGIILAP-LKTLVVTQLVPATSYIF 414


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,943,165
Number of Sequences: 37544
Number of extensions: 308467
Number of successful extensions: 528
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)