Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_F09
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   0.57 
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   4.0  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.3  

>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 420 YFISTGPIFPRKFNIILTQSMLLM*HHIMCLCF 518
           YF++   +F R FN+I    MLL+ H   CL F
Sbjct: 236 YFLNMASVFMRIFNLIC--MMLLIGHWSGCLQF 266


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 578 GTALHLLKCSVPLVLSLPTLKTQTHN 501
           G   HL    +P+V+ LP +    HN
Sbjct: 336 GPKEHLRSLGIPVVVDLPGVGENLHN 361


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 482 VINVTSYYVSVFLEWAVTALR 544
           +I VTS +++ +LEW     R
Sbjct: 312 IILVTSSFITFWLEWNAVPAR 332


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 482 VINVTSYYVSVFLEWAVTALR 544
           +I VTS +++ +LEW     R
Sbjct: 281 IILVTSSFITFWLEWNAVPAR 301


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 482 VINVTSYYVSVFLEWAVTALR 544
           +I VTS +++ +LEW     R
Sbjct: 332 IILVTSSFITFWLEWNAVPAR 352


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 482 VINVTSYYVSVFLEWAVTALR 544
           +I VTS +++ +LEW     R
Sbjct: 281 IILVTSSFITFWLEWNAVPAR 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,485
Number of Sequences: 438
Number of extensions: 3990
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)