Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_F08
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016672-6|AAM34394.2|  165|Caenorhabditis elegans Vig (drosophi...    29   3.9  
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p...    27   8.9  

>AF016672-6|AAM34394.2|  165|Caenorhabditis elegans Vig (drosophila
           vasa intronic gene)ortholog protein 1, isoform b
           protein.
          Length = 165

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 6   FXIYKLQILLCIPLAPCNCSAGXFVFQIHLFF 101
           F I    I L +P+ P NCS    +F I LFF
Sbjct: 97  FKILLFSISLPVPIYPTNCSFPKCLFLIFLFF 128


>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical protein
            T25C12.3 protein.
          Length = 2103

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 466  TAPSLVGRLHRSLLSRPQVTPNSANLSERSCEF 564
            T PS+ G+L+ ++LS  +   NS  L  R+C +
Sbjct: 1333 TKPSMEGKLNYAVLSSNRTITNSLPLGNRACTY 1365


>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical protein
            T25C12.3 protein.
          Length = 2103

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 466  TAPSLVGRLHRSLLSRPQVTPNSANLSERSCEF 564
            T PS+ G+L+ ++LS  +   NS  L  R+C +
Sbjct: 1333 TKPSMEGKLNYAVLSSNRTITNSLPLGNRACTY 1365


>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical protein
            T25C12.3 protein.
          Length = 2103

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 466  TAPSLVGRLHRSLLSRPQVTPNSANLSERSCEF 564
            T PS+ G+L+ ++LS  +   NS  L  R+C +
Sbjct: 1333 TKPSMEGKLNYAVLSSNRTITNSLPLGNRACTY 1365


>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
            F18C12.2b protein.
          Length = 2271

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 481  VGRLHRSLLSRPQVTPNSANLSERSCEFG 567
            VG+L+   +  P V  N+ +L+++SC +G
Sbjct: 1973 VGKLYEQHIKDPTVKWNTTSLADKSCAYG 2001


>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
            F18C12.2a protein.
          Length = 2279

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 481  VGRLHRSLLSRPQVTPNSANLSERSCEFG 567
            VG+L+   +  P V  N+ +L+++SC +G
Sbjct: 1981 VGKLYEQHIKDPTVKWNTTSLADKSCAYG 2009


>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
            protein RME-8 protein.
          Length = 2279

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 481  VGRLHRSLLSRPQVTPNSANLSERSCEFG 567
            VG+L+   +  P V  N+ +L+++SC +G
Sbjct: 1981 VGKLYEQHIKDPTVKWNTTSLADKSCAYG 2009


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,629,537
Number of Sequences: 27780
Number of extensions: 200410
Number of successful extensions: 352
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)