Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_F02
(633 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 188 8e-49
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 183 2e-47
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 29 0.42
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 28 0.97
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 2.3
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo... 27 2.3
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 27 3.0
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 3.9
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 5.2
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 6.9
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 6.9
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 25 9.1
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 188 bits (457), Expect = 8e-49
Identities = 92/173 (53%), Positives = 124/173 (71%)
Frame = -1
Query: 525 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 346
+ I ++ + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQG-NTIKFIVWHGS 61
Query: 345 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYI 166
+K A +RT S + NMI GVT+GF+YKMR VYAHFPIN TE +++EIRNFLGE+
Sbjct: 62 RKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121
Query: 165 RRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIKKVL 7
R +K PGVTV S KDE+IIEGNSLE+VS SAA I+Q V+NKDI+K L
Sbjct: 122 RVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFL 174
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 183 bits (446), Expect = 2e-47
Identities = 90/173 (52%), Positives = 122/173 (70%)
Frame = -1
Query: 525 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 346
+ I ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGS 61
Query: 345 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYI 166
+K A +R+V S + NMI GVT+GF+YKMR VYAHFPIN TE +++EIRNFLGE+
Sbjct: 62 RKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121
Query: 165 RRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIKKVL 7
R +K PGVTV S KDE+I+EGNSLE+VS SAA I+Q V+NKDI+K L
Sbjct: 122 RVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFL 174
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 29.5 bits (63), Expect = 0.42
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = -1
Query: 498 KIPDGLTVHVKSRLVTV---KGP-RGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELA 331
K+PDG+ + SRL K P L F H +VD+ + L + E WF
Sbjct: 1564 KVPDGIFLKT-SRLPIFEANKAPYNAYLLDFFTHGSVDMLIEQNNLKQSEIWFVLNDFSL 1622
Query: 330 AVRTVCSHVENMIKGVT 280
+ T+CS + N++ VT
Sbjct: 1623 VLATICSCLGNLLNLVT 1639
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 28.3 bits (60), Expect = 0.97
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -1
Query: 138 TVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKN-KDIKKVLG 4
+V+N K EL +EG L+ V ++ ++ T+ + ++K VLG
Sbjct: 1228 SVINQESGKIELFMEGTGLQAVMNTEGIVGTKTSTNHVMEMKDVLG 1273
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = -1
Query: 129 NSPKQKDELIIEGNSLEDVSSSAALIQQS 43
+SPK+K +L ++G L+ + + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277
>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 432
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -3
Query: 589 LNEFGRPMIFFRLLCQTKPKHEANCSKSESQNPRRA 482
L++F + F +LC + K + C K + +NP A
Sbjct: 15 LHKFALKISKFLILCMRRNKRQLACMKCQCENPMAA 50
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 472 MDRKPVWDFDFLICYNLLHVWALFDTRAGKRSSAGRIHLNSL 597
M+R P+ FDF+ N +H LF K S + I+L++L
Sbjct: 294 MERLPIPPFDFITSLNSIHEGLLF--IGSKNSESKLINLSTL 333
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +1
Query: 316 DCPHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGPFNCHQT 462
D P+G GS F+ V+H+N N+ ++ +N N H +
Sbjct: 386 DFPYGNSYGNGSSHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHS 434
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/63 (22%), Positives = 35/63 (55%)
Frame = -1
Query: 465 SRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKG 286
S+L + + ++ RN + L++ ++VN +E W G + +AV T + ++++ +
Sbjct: 1111 SKLCNLLNDKNIVVRN-QSLSLFHQLVNKYPFLLESWIGLQLVQSAVNTNTADIDDLYRL 1169
Query: 285 VTK 277
++K
Sbjct: 1170 LSK 1172
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.4 bits (53), Expect = 6.9
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 322 PHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGP 444
PH GK S +N E+R A+V+S + PF GP
Sbjct: 127 PHAGKAA-QSAHVMNSTESRPSSAHVSSSYTQKPFAFPLGP 166
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 6.9
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 332 ASSFLDPNHFSTFRRRGFTMRMSTAKC-LKFLLRTPRG 442
A SFL+P STF R F+ +S C + LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 25.0 bits (52), Expect = 9.1
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 486 RLGF*LSDLLQFASCLGFV*HKSRKKIIGRPNSFKFPIVSRI-KYVLA 626
+LG ++ L+F + H +RKKII N +K I + KY L+
Sbjct: 941 KLGASITVFLKFPDTQEYQLHFNRKKIISNCNLYKVAIDCELPKYALS 988
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,334
Number of Sequences: 5004
Number of extensions: 55871
Number of successful extensions: 167
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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