Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_F01
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    27   2.6  
SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase |Schizosacchar...    26   6.1  
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    26   6.1  

>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 705 PAPAPRLRTQPHPA 664
           P PAP ++T PHPA
Sbjct: 330 PTPAPPVKTSPHPA 343


>SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 137 PINNLLQRHLSATVVSMHVFVTRSAADDRAVLLTLC 244
           P  ++LQ HL+  + + H FVT +      ++L  C
Sbjct: 55  PTRSVLQVHLAKLMKAKHAFVTSNGMSALDMILRCC 90


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = -1

Query: 514 TKVNKSKV*DRICKQYI----KKFIFLYERDYFRLASCIKAP 401
           T +N ++V DRI K YI    KK I + E DY  + +C  +P
Sbjct: 201 TPININRVDDRIGKPYIKVDPKKVIGIVEADYGDI-TCANSP 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,578,350
Number of Sequences: 5004
Number of extensions: 46826
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)