Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_F01
         (709 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0272 + 22604458-22604877                                         30   2.1  
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434...    29   3.6  
04_04_0347 + 24564589-24565296                                         28   8.4  
03_02_0932 + 12495700-12495738,12495859-12496093,12496178-124964...    28   8.4  

>03_05_0272 + 22604458-22604877
          Length = 139

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = -2

Query: 693 PRLRTQPHPAPPEGDHG 643
           PR R QP PAP EG HG
Sbjct: 101 PRPREQPQPAPREGRHG 117


>11_06_0151 - 20643032-20643085,20643202-20643307,20643415-20643495,
            20643588-20643715,20643829-20643903,20644853-20645374,
            20646622-20646687,20647990-20648076,20648173-20648247,
            20648705-20648821,20648932-20649015,20649152-20649217,
            20649352-20649417,20650079-20650150,20650231-20650332,
            20650428-20650605,20650700-20650755,20653159-20653269,
            20653354-20653422,20653558-20653741,20653826-20653914,
            20654070-20654147,20654509-20654631,20654755-20654874,
            20654975-20655055,20655285-20655431,20655533-20655611,
            20657114-20657223,20659138-20659236,20659467-20659582,
            20659673-20659781,20659839-20660069,20660152-20660417,
            20661349-20661506,20661601-20661751,20661897-20661966,
            20662203-20662232
          Length = 1451

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 708  APAPAPRLRTQPHPAPPEGD 649
            +PAP P    QP PAP  GD
Sbjct: 1263 SPAPEPAAEQQPSPAPEHGD 1282


>04_04_0347 + 24564589-24565296
          Length = 235

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -2

Query: 708 APAPAPRLRTQPHPAPPEGD 649
           APAPAP    Q  PAP  GD
Sbjct: 154 APAPAPSSHVQYSPAPTPGD 173


>03_02_0932 +
           12495700-12495738,12495859-12496093,12496178-12496423,
           12496519-12496572,12497329-12497589,12497750-12497802,
           12497893-12498016,12498147-12498401,12498798-12499888,
           12500001-12500007,12500316-12500445,12500617-12500731,
           12500783-12500853,12501246-12501354,12501550-12501738,
           12502519-12502644,12503048-12503563
          Length = 1206

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -3

Query: 689 GSGPNRTQRHRKAITVHFASSACGYVDVRGSVQERLAADVQAAATRR 549
           G G +  +  R        SS   Y D++ SVQ   AA V+   TRR
Sbjct: 636 GGGDHEPEEERGTRLAVIGSSHASY-DIQDSVQHSSAASVETTTTRR 681


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,095,894
Number of Sequences: 37544
Number of extensions: 342250
Number of successful extensions: 1244
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)