Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_E24
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    49   5e-07
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    48   1e-06
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    36   0.005
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    35   0.011
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    29   0.43 
SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated pro...    27   1.7  
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ...    27   2.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   4.0  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    26   5.2  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    26   5.2  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   6.9  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    25   9.1  

>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 49.2 bits (112), Expect = 5e-07
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
 Frame = -2

Query: 430 GTVYVHCKAGRTRSATLVGCYLMMKNGWSPHEAVEYMRSRRPHILLHTKQ-WEALDIFH 257
           G + VHCKAG  R+  L+G YL+ K+ ++ +E + YMR  RP +++  +Q W  ++  H
Sbjct: 280 GVIAVHCKAGLGRTGCLIGAYLIYKHCFTANEVIAYMRIMRPGMVVGPQQHWLHINQVH 338



 Score = 30.3 bits (65), Expect = 0.24
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 400 RTRSATLVGCYLMMKNGWSPHEAVEYMRSRRPHIL 296
           R  +A L+ CY+++   W PH A+  +    P  L
Sbjct: 96  RANAACLLACYMVLVQNWPPHLALAPLAQAEPPFL 130


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 21/42 (50%), Positives = 27/42 (64%)
 Frame = -2

Query: 424 VYVHCKAGRTRSATLVGCYLMMKNGWSPHEAVEYMRSRRPHI 299
           V VHC AG +RS TLV  YLM +N W+  EA+ ++  RR  I
Sbjct: 127 VLVHCFAGISRSVTLVAAYLMKENNWNTEEALSHINERRSGI 168


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 21/63 (33%), Positives = 35/63 (55%)
 Frame = -2

Query: 487 LPLDNKLSGVPADVGQINTGTVYVHCKAGRTRSATLVGCYLMMKNGWSPHEAVEYMRSRR 308
           L LD  +S V  +  Q+N   V ++C+ G +RSA L+  ++M     +  +A EY++ R 
Sbjct: 134 LELDKLVSFVAYNAMQLNK-KVLINCQMGISRSACLMIAFIMKTLNLNVSDAYEYVKERS 192

Query: 307 PHI 299
           P I
Sbjct: 193 PWI 195


>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 34.7 bits (76), Expect = 0.011
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = -2

Query: 427 TVYVHCKAGRTRSATLVGCYLMMKNGWSPHEAVEYMRSRR 308
           T+ VHCKAG+ R+ T++  YL+   G +  +++E    +R
Sbjct: 124 TLVVHCKAGKGRTGTVICSYLVAFGGLTAKQSLELYTEKR 163


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1016

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 250  VVCGIYRGPPTASCGEVCVDASI 318
            ++C I  G P  +CG  C D+SI
Sbjct: 983  ILCPIINGSPLLACGNACYDSSI 1005


>SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated
           protein Moa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 172

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 444 PTSAGTPESLLSNGRNLFINTT 509
           P +  TP+S +  G NLF+N T
Sbjct: 96  PVATSTPKSCMRTGSNLFLNET 117


>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -2

Query: 424 VYVHCKAGRTRSATLVGCYLMMKNGWSPHEAVEYMRSRRP 305
           V +HC  G+ R+  ++GC   + N    +   EY+    P
Sbjct: 161 VLLHCSRGKHRTGIVIGCLRALMNWPVGNRLQEYISFSHP 200


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 588 ENTKWNSYSWLQQIFLRPPIKTNY 517
           E   WN ++ + ++ +R PIKT Y
Sbjct: 308 EMEDWNEFNDIYKLIIRHPIKTEY 331


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 436 NTGTVYVHCKAGRTRSATLV 377
           N G ++VHC AG  R+ T +
Sbjct: 622 NDGPMFVHCSAGVGRTGTFI 641


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 21/103 (20%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
 Frame = -1

Query: 518 IRRSRVYKQIPAVGQQTFGSPCRRG-ADQHRHRIRSLQGG*DEERHARGLLPYDEKRLVT 342
           +++ +  KQ   V   T     +R  AD  +     ++    ++   R +LP   +R+++
Sbjct: 10  VQKRKKQKQRSVVDPVTRERQLKRNLADLEKDNFSDIRFEIPKDLLQRRVLPISVRRILS 69

Query: 341 PRSGGVHEIEASTHTSPHEAVGGPRYIPQTTRADVTCSYHKQY 213
            R   V+ ++ + ++  +  V  P Y P     +V C Y  +Y
Sbjct: 70  SRKTFVNYLDETPNSRYNTCVAKPSYKPPRKFCNV-CGYWGKY 111


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 253 QHVRT*PAPTINNMVRV*IEYALVCHTCV 167
           Q+V   P  T +  VR+ +    +CHTC+
Sbjct: 747 QYVHDNPHTTFSKRVRIFLLNLAICHTCL 775


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = -3

Query: 495 TDSCRWT----TNFRESLPTWGRSTPAPYTFTARRVGRGAPRSW 376
           T S  WT    +N+    P    +T A  TFTA ++  GA ++W
Sbjct: 651 TFSNNWTGILWSNYAIYDPKTAYNTFAASTFTADKIDNGASKTW 694


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,869
Number of Sequences: 5004
Number of extensions: 60610
Number of successful extensions: 185
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)