Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_E23
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 77 3e-15
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 75 1e-14
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 73 3e-14
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 73 4e-14
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 71 1e-13
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 70 3e-13
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 69 4e-13
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 69 5e-13
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 68 9e-13
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 67 2e-12
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 67 2e-12
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 67 2e-12
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 67 2e-12
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 66 3e-12
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 65 9e-12
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 64 2e-11
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 63 3e-11
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 62 6e-11
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 60 2e-10
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 60 3e-10
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 58 7e-10
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 56 4e-09
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 45 1e-05
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 35 0.010
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 34 0.014
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 33 0.032
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ... 30 0.30
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 27 1.6
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 2.1
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 3.7
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac... 26 4.8
SPCC613.03 |||conserved fungal protein|Schizosaccharomyces pombe... 25 6.4
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi... 25 8.5
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18... 25 8.5
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 25 8.5
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 8.5
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 76.6 bits (180), Expect = 3e-15
Identities = 34/76 (44%), Positives = 49/76 (64%)
Frame = -1
Query: 558 LHGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIG 379
+HG+ KER ++ F+ + LICTD+ ARGID+ + +IN LP + NY+HRIG
Sbjct: 290 MHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIG 349
Query: 378 RVGRAERMGLAISLVS 331
R GR R G+AI+ V+
Sbjct: 350 RSGRFGRKGVAINFVT 365
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 74.5 bits (175), Expect = 1e-14
Identities = 32/73 (43%), Positives = 49/73 (67%)
Frame = -1
Query: 558 LHGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIG 379
+HGDR +ER+ LE+F++ + ++ T VA+RG+DI + +IN LP + +YVHRIG
Sbjct: 460 IHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIG 519
Query: 378 RVGRAERMGLAIS 340
R GRA G A++
Sbjct: 520 RTGRAGNTGQAVA 532
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 72.9 bits (171), Expect = 3e-14
Identities = 39/97 (40%), Positives = 54/97 (55%)
Frame = -1
Query: 588 TFGNELSCVCLHGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPD 409
T + + V +HGD R L FK+ + L+ TDVAARG+DI + +IN+T P
Sbjct: 436 TLARKYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPL 495
Query: 408 EKSNYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGE 298
+YVHRIGR GRA G AI+ + P+ + GE
Sbjct: 496 TIEDYVHRIGRTGRANTKGTAITFFT--PQDKSHAGE 530
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 72.5 bits (170), Expect = 4e-14
Identities = 34/82 (41%), Positives = 51/82 (62%)
Frame = -1
Query: 576 ELSCVCLHGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSN 397
EL LH + +ER ++L F+ K L+ TDVA+RG+DI + +IN LP + +
Sbjct: 282 ELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDD 341
Query: 396 YVHRIGRVGRAERMGLAISLVS 331
Y+HR+GR RA R G +IS+V+
Sbjct: 342 YIHRVGRTARAGRSGESISIVT 363
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 70.9 bits (166), Expect = 1e-13
Identities = 35/87 (40%), Positives = 50/87 (57%)
Frame = -1
Query: 573 LSCVCLHGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNY 394
L+ +HG ++R LE F++ + +L+ TDVA+RGIDI G+ +IN P Y
Sbjct: 529 LNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVY 588
Query: 393 VHRIGRVGRAERMGLAISLVSTVPEKV 313
+HR+GR RA R G AI+L KV
Sbjct: 589 LHRVGRTARAGRSGRAITLAGEGDRKV 615
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 69.7 bits (163), Expect = 3e-13
Identities = 31/86 (36%), Positives = 48/86 (55%)
Frame = -1
Query: 564 VCLHGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHR 385
V LHG + ++R+ +E +N L+ TD+A RGIDI + ++N + +Y HR
Sbjct: 544 VTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHR 603
Query: 384 IGRVGRAERMGLAISLVSTVPEKVWY 307
IGR GRA + G AI+ + V+Y
Sbjct: 604 IGRTGRAGKSGTAITFLGPEDTDVYY 629
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 69.3 bits (162), Expect = 4e-13
Identities = 31/79 (39%), Positives = 46/79 (58%)
Frame = -1
Query: 564 VCLHGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHR 385
+C+HG +ER + FK+ + + TDV RGIDI + +IN +PD +Y+HR
Sbjct: 323 ICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHR 382
Query: 384 IGRVGRAERMGLAISLVST 328
+GR GR GLAI+ S+
Sbjct: 383 VGRAGRFGTKGLAITFSSS 401
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 68.9 bits (161), Expect = 5e-13
Identities = 31/76 (40%), Positives = 46/76 (60%)
Frame = -1
Query: 558 LHGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIG 379
+HGD +R + F+ + LI TD+ ARGID+ + +IN LP + NY+HRIG
Sbjct: 288 MHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIG 347
Query: 378 RVGRAERMGLAISLVS 331
R GR R G++I+ V+
Sbjct: 348 RGGRFGRKGVSINFVT 363
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 68.1 bits (159), Expect = 9e-13
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Frame = -1
Query: 594 FXTFGNELSCVCLHGDRKPKERKDNLEIFKNSQVK-FLICTDVAARGIDISGLPFMINIT 418
F T+ V LHG + R N E FK S K L TD+A+RG+DI + F++ +
Sbjct: 276 FLTYKLPFEIVALHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLD 335
Query: 417 LPDEKSNYVHRIGRVGRAERMGLAISLVS 331
P + ++ HR GR GRA R G+AI L++
Sbjct: 336 PPLDPKSFSHRCGRAGRAGRAGVAIVLLN 364
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 67.3 bits (157), Expect = 2e-12
Identities = 33/80 (41%), Positives = 46/80 (57%)
Frame = -1
Query: 570 SCVCLHGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYV 391
S + LHG R L FK+ L+ TDVAARG+DI + +IN +P + Y+
Sbjct: 311 SAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYI 370
Query: 390 HRIGRVGRAERMGLAISLVS 331
HR+GR RA R G +I+LV+
Sbjct: 371 HRVGRTARAGRAGKSIALVT 390
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 67.3 bits (157), Expect = 2e-12
Identities = 30/80 (37%), Positives = 47/80 (58%)
Frame = -1
Query: 579 NELSCVCLHGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKS 400
+E+ +HG+ +R++ L F+ ++ LI TD+ ARGID G+ +IN P
Sbjct: 311 DEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVH 370
Query: 399 NYVHRIGRVGRAERMGLAIS 340
+Y+HRIGR GRA G A++
Sbjct: 371 SYIHRIGRTGRAGNTGQAVT 390
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 66.9 bits (156), Expect = 2e-12
Identities = 28/81 (34%), Positives = 45/81 (55%)
Frame = -1
Query: 558 LHGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIG 379
+HG + +R + +K LI T V ARG+D+ L ++N P+ +YVHR+G
Sbjct: 698 IHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVG 757
Query: 378 RVGRAERMGLAISLVSTVPEK 316
R GRA G+A++ ++ EK
Sbjct: 758 RTGRAGHTGVAVTFITPEQEK 778
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 66.9 bits (156), Expect = 2e-12
Identities = 30/73 (41%), Positives = 42/73 (57%)
Frame = -1
Query: 564 VCLHGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHR 385
+ +HGD+ ER L F+ + ++ TDVA+RGID+ G+ + N P +YVHR
Sbjct: 397 LAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHR 456
Query: 384 IGRVGRAERMGLA 346
IGR GRA G A
Sbjct: 457 IGRTGRAGAKGTA 469
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 66.5 bits (155), Expect = 3e-12
Identities = 33/72 (45%), Positives = 43/72 (59%)
Frame = -1
Query: 558 LHGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIG 379
LH K+R +LE FKN+ L+CTDVAARGIDI + +I+ +P YVHR G
Sbjct: 419 LHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSG 478
Query: 378 RVGRAERMGLAI 343
R RA G++I
Sbjct: 479 RTARANEDGVSI 490
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 64.9 bits (151), Expect = 9e-12
Identities = 30/90 (33%), Positives = 53/90 (58%)
Frame = -1
Query: 576 ELSCVCLHGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSN 397
+L + LHG +K + R + F N++ L+CT+VAARG+DI + +++ PD+ +
Sbjct: 360 DLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRD 419
Query: 396 YVHRIGRVGRAERMGLAISLVSTVPEKVWY 307
Y+HR+GR R + G SL+ P ++ +
Sbjct: 420 YIHRVGRTARGTK-GTGKSLMFLAPSELGF 448
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 63.7 bits (148), Expect = 2e-11
Identities = 31/80 (38%), Positives = 40/80 (50%)
Frame = -1
Query: 570 SCVCLHGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYV 391
SC H R F+N + L+C+D+ RGIDI + +IN P Y+
Sbjct: 307 SCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYL 366
Query: 390 HRIGRVGRAERMGLAISLVS 331
HRIGR GR GLAIS +S
Sbjct: 367 HRIGRSGRFGHRGLAISFIS 386
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 62.9 bits (146), Expect = 3e-11
Identities = 28/80 (35%), Positives = 46/80 (57%)
Frame = -1
Query: 573 LSCVCLHGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNY 394
+S + LHG +K R + F +S+ L CTD+ ARG+D + ++I + P++ Y
Sbjct: 310 ISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTY 369
Query: 393 VHRIGRVGRAERMGLAISLV 334
+HR+GR R R G A+ L+
Sbjct: 370 IHRVGRTARYNRSGNALLLL 389
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 62.1 bits (144), Expect = 6e-11
Identities = 29/77 (37%), Positives = 41/77 (53%)
Frame = -1
Query: 576 ELSCVCLHGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSN 397
++ C LH +R+ E F+ Q L TDV ARG+D + ++ IT P +
Sbjct: 317 KIPCFILHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDD 376
Query: 396 YVHRIGRVGRAERMGLA 346
Y+HRIGR GRA + G A
Sbjct: 377 YIHRIGRTGRAGKTGEA 393
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 60.1 bits (139), Expect = 2e-10
Identities = 31/87 (35%), Positives = 43/87 (49%)
Frame = -1
Query: 588 TFGNELSCVCLHGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPD 409
+ SC ERK + F + L+C+D+ ARGID++ +IN P
Sbjct: 457 SLNQSFSCGLFTSSLSRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPL 516
Query: 408 EKSNYVHRIGRVGRAERMGLAISLVST 328
+YVHRIGR RA R G A +LV +
Sbjct: 517 SVRSYVHRIGRTARAGREGFAWTLVQS 543
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 59.7 bits (138), Expect = 3e-10
Identities = 30/75 (40%), Positives = 43/75 (57%)
Frame = -1
Query: 558 LHGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIG 379
++G + R + + F+ + L+ TDVA+RGIDI L +IN P + +VHR+G
Sbjct: 376 IYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVG 435
Query: 378 RVGRAERMGLAISLV 334
R RA R G A SLV
Sbjct: 436 RTARAGRTGWAYSLV 450
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 58.4 bits (135), Expect = 7e-10
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Frame = -1
Query: 558 LHGDRKPKERKDNLEIFKNSQVK---FLICTDVAARGIDISGLPFMINITLPDEKSNYVH 388
LHG + R L +F +S+ L+CTDVAARG+D+ + ++ P +Y+H
Sbjct: 473 LHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLH 532
Query: 387 RIGRVGRAERMGLAI 343
RIGR RA G AI
Sbjct: 533 RIGRTARAGHNGAAI 547
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 56.0 bits (129), Expect = 4e-09
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Frame = -1
Query: 561 CLHGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLP------DEKS 400
CL G+ + +R ++ F+ K L+ T+V ARGID+S + ++N +P +
Sbjct: 381 CLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQ 440
Query: 399 NYVHRIGRVGRAERMGLAISLV 334
Y+HRIGR GR R+G++I+ V
Sbjct: 441 TYLHRIGRTGRFGRVGVSINFV 462
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 44.8 bits (101), Expect = 1e-05
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = -1
Query: 465 ARGIDISGLPFMINITLPDEKSNYVHRIGRVGRAERMGLAISLV 334
ARG+D + ++N +P +Y+HRIGR RA + G A+S V
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFV 430
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 34.7 bits (76), Expect = 0.010
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -1
Query: 537 KERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIGR 376
+ +KD L FK + LI T VA GID+ +I + + YV GR
Sbjct: 410 RRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGR 463
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 34.3 bits (75), Expect = 0.014
Identities = 15/75 (20%), Positives = 32/75 (42%)
Frame = -1
Query: 534 ERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIGRVGRAERM 355
++K+ ++ F+ + L+ T + G+DI +I + R+GR GR +
Sbjct: 519 QQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTIQRMGRTGRKKSG 578
Query: 354 GLAISLVSTVPEKVW 310
+ + L + W
Sbjct: 579 KVFVLLTEDCEDSKW 593
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 33.1 bits (72), Expect = 0.032
Identities = 18/76 (23%), Positives = 33/76 (43%)
Frame = -1
Query: 537 KERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKSNYVHRIGRVGRAER 358
K + + ++ F+ +V LI T + G+DI + +I + R+GR GR +
Sbjct: 479 KLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQRMGRTGRKRK 538
Query: 357 MGLAISLVSTVPEKVW 310
+ + L E W
Sbjct: 539 GYIYMLLTRGKEEAKW 554
>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 170
Score = 29.9 bits (64), Expect = 0.30
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 297 WCSSRGRNCWNTNLIDDKPKGCCMWYN 217
WCS+ G C +L K G C WYN
Sbjct: 90 WCSN-GEECLYLHLDPSKQVGVCAWYN 115
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 153 DMKVPSNEFDGKVVYGEKRKQAGSGYQD 70
+++ P D KV + EKRK++ GY D
Sbjct: 220 EVQEPVTNVDAKVFHPEKRKRSREGYAD 247
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 555 HGDRKPKERKDNLEIFKNSQVKFLICTDVAARGID 451
H +RK + E+F N++V+ LI T A G++
Sbjct: 1427 HAGLTENDRKISEELFVNNKVQILIATSTLAWGVN 1461
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 26.2 bits (55), Expect = 3.7
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = +1
Query: 337 ETDGQAHAFRATDAPDAMYVVGLFVGKRYVDHERQARDVDAASSDVGANQKLHLAVLEYL 516
+ D H + A+++ + V H DVD + D N LHLA +
Sbjct: 42 QVDNLLHNKSKDECTHALFISIQCANVQMVKHILSVFDVDVNAYDKNKNTPLHLAAMAGR 101
Query: 517 Q-IVFALL 537
Q IV ALL
Sbjct: 102 QDIVEALL 109
>SPAC823.07 |||GPI-phospholipase A2 activity regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = -2
Query: 413 PTKSPTTYIA-SGASVARNAWAWPSV---SSPPYPKRYGIMASGVHLADGTAGTLI 258
P + P + S A V NAW W SV P ++ ++G + G+ TLI
Sbjct: 132 PDEHPAKRLCLSWAIVGMNAWVWSSVFHIRDTPITEKLDYFSAGAFVLFGSYCTLI 187
>SPCC613.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 189
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 555 HGDRKPKERKDNLEIFKNSQVKF 487
HGD+KP+ER+ + + N K+
Sbjct: 162 HGDKKPEERRKHFVKYNNIPDKY 184
>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 173
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/39 (25%), Positives = 16/39 (41%)
Frame = +2
Query: 62 LTWSWYPEPACFLFSP*TTLPSNSLDGTFISVSTCCIVI 178
+ W+WY +CFL N G+ I + + I
Sbjct: 31 MLWNWYIHDSCFLAKSWHINTGNKFAGSIIGIFFFAVAI 69
>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
S18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 497 WLFLNISKLSLRSFGFRSPCRQTQDSSLPNV 589
+L LN++K+ LR F +SP R L ++
Sbjct: 45 YLMLNLTKVGLRRFWSQSPRRNAPKKELSSL 75
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.0 bits (52), Expect = 8.5
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = -1
Query: 219 NEPQYLADIEDHLNITIQQVETDMKVPSNEFDGKVVYGEKRKQAGSGYQDHVSQMAPVVK 40
+EP A+ D L ++ QQ ++++ NE + K+K+ ++HV VK
Sbjct: 640 DEPLEAANQFDLLKVSPQQ-KSEVPPKRNELSQSKLKNRKKKENSETNKNHVDMSPGFVK 698
Query: 39 SLQELESQAQRDE 1
L+ Q+ E
Sbjct: 699 ILKRSPLADQKKE 711
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 501 SQVKFLIC-TDVAARGIDISGLPFMINITLPDEKSNYVHR 385
+++ FL C V + I PF + + EK NYVHR
Sbjct: 119 ARLGFLACGLYVTSYFFSIKNNPFALLLISSHEKMNYVHR 158
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,482,663
Number of Sequences: 5004
Number of extensions: 51014
Number of successful extensions: 175
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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